Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   QI003_RS06095 Genome accession   NZ_CP124601
Coordinates   1215072..1216025 (+) Length   317 a.a.
NCBI ID   WP_014663517.1    Uniprot ID   -
Organism   Bacillus stercoris strain BS21     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1210072..1221025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QI003_RS06070 (QI003_06070) argF 1211902..1212861 (+) 960 WP_069149363.1 ornithine carbamoyltransferase -
  QI003_RS06075 (QI003_06075) - 1212947..1213126 (+) 180 WP_003245356.1 YjzC family protein -
  QI003_RS06080 (QI003_06080) - 1213173..1213358 (-) 186 WP_003245236.1 DUF2929 domain-containing protein -
  QI003_RS06085 (QI003_06085) - 1213609..1214343 (+) 735 WP_040083462.1 hypothetical protein -
  QI003_RS06090 (QI003_06090) - 1214425..1214982 (+) 558 WP_014663516.1 hypothetical protein -
  QI003_RS06095 (QI003_06095) med 1215072..1216025 (+) 954 WP_014663517.1 transcriptional regulator Med Regulator
  QI003_RS06100 (QI003_06100) comZ 1216040..1216231 (+) 192 WP_003224559.1 ComG operon transcriptional repressor ComZ Regulator
  QI003_RS06105 (QI003_06105) - 1216261..1216488 (-) 228 WP_080478200.1 hypothetical protein -
  QI003_RS06110 (QI003_06110) fabH 1216653..1217591 (+) 939 WP_071582229.1 beta-ketoacyl-ACP synthase III -
  QI003_RS06115 (QI003_06115) fabF 1217614..1218855 (+) 1242 WP_014663520.1 beta-ketoacyl-ACP synthase II -
  QI003_RS06120 (QI003_06120) - 1218930..1219715 (+) 786 WP_282374179.1 DUF2268 domain-containing protein -
  QI003_RS06125 (QI003_06125) appD 1219907..1220893 (+) 987 WP_014663522.1 oligopeptide ABC transporter ATP-binding protein AppD -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35297.76 Da        Isoelectric Point: 4.5025

>NTDB_id=826598 QI003_RS06095 WP_014663517.1 1215072..1216025(+) (med) [Bacillus stercoris strain BS21]
MITRLVMIFSVLLLLSGCGQTPFKGKIEKVGMLFPDTINDLVWGTKGYKGLLNIQSKYNVDVYYKEGVKTEEDIINAIED
FHKRGVNLLYGHGSEYAEVFNLVGEDYPDMEFVISNAKAKADNVTSVHFSGEAMGFFGGMTAAHMSKTNQVGVIASFTWQ
PEVDGFIKGAKYENPDIEVNTKYTDHWDDDTTAVKLYQKMKNEGADVVYPAGDGYNVPVIQQIKKDGLYAIGYVTDQSDL
GENTVLTSTVQNVDKAYEIIAEQFNKGTLEGGDHYYDLNTGVVEMGTFSPLVDEDFQQRIAKLIKTYNKTGDLPKNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=826598 QI003_RS06095 WP_014663517.1 1215072..1216025(+) (med) [Bacillus stercoris strain BS21]
TTGATCACAAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGAGTGGATGTGGACAAACTCCGTTCAAAGGAAAAAT
TGAGAAGGTCGGCATGCTCTTTCCTGATACGATTAATGACCTCGTATGGGGCACAAAAGGGTATAAAGGATTACTGAATA
TACAATCCAAATACAATGTGGACGTCTACTATAAAGAAGGCGTTAAAACAGAAGAAGATATCATAAATGCGATTGAGGAT
TTTCATAAGAGGGGCGTCAATCTGCTCTACGGCCATGGGAGTGAATATGCAGAGGTGTTTAACTTGGTCGGCGAAGATTA
TCCAGATATGGAATTCGTCATTTCCAATGCGAAAGCGAAAGCTGACAATGTGACGAGTGTCCATTTTAGCGGGGAAGCAA
TGGGCTTTTTTGGAGGAATGACTGCTGCCCATATGTCGAAAACCAATCAGGTCGGTGTCATTGCTTCCTTTACGTGGCAG
CCTGAGGTTGACGGTTTTATCAAAGGAGCCAAGTATGAAAATCCAGATATAGAAGTAAACACGAAATATACGGATCATTG
GGATGATGATACGACAGCAGTAAAGCTTTATCAGAAAATGAAGAACGAAGGTGCGGATGTTGTGTATCCTGCTGGAGACG
GGTATAATGTTCCTGTTATTCAGCAAATCAAAAAAGACGGGCTTTATGCCATCGGCTACGTTACAGATCAATCGGACCTG
GGCGAGAATACCGTATTAACCAGCACGGTACAAAATGTGGACAAGGCCTATGAAATCATTGCTGAGCAATTCAACAAAGG
CACCCTTGAAGGCGGCGATCATTACTACGACCTGAATACGGGAGTAGTCGAGATGGGAACATTCAGCCCGCTCGTCGATG
AAGACTTTCAGCAAAGAATCGCCAAGCTGATCAAAACGTACAACAAAACAGGCGATCTGCCAAAAAACGAGTAA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

99.369

100

0.994