Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   QI003_RS05665 Genome accession   NZ_CP124601
Coordinates   1132035..1132613 (+) Length   192 a.a.
NCBI ID   WP_282374146.1    Uniprot ID   -
Organism   Bacillus stercoris strain BS21     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1127035..1137613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QI003_RS05645 (QI003_05645) hemAT 1127546..1128844 (-) 1299 WP_282374144.1 heme-based aerotactic transducer HemAT -
  QI003_RS05650 (QI003_05650) - 1128984..1130513 (-) 1530 WP_282374145.1 FAD-dependent oxidoreductase -
  QI003_RS05655 (QI003_05655) - 1130625..1131482 (+) 858 WP_071582267.1 SDR family oxidoreductase -
  QI003_RS05660 (QI003_05660) - 1131509..1131742 (-) 234 WP_014663441.1 IDEAL domain-containing protein -
  QI003_RS05665 (QI003_05665) comK 1132035..1132613 (+) 579 WP_282374146.1 competence transcription factor ComK Regulator
  QI003_RS05670 (QI003_05670) - 1132659..1133558 (-) 900 WP_071582265.1 SDR family oxidoreductase -
  QI003_RS05675 (QI003_05675) - 1133774..1134043 (+) 270 WP_282374147.1 excalibur calcium-binding domain-containing protein -
  QI003_RS05680 (QI003_05680) - 1134087..1135556 (-) 1470 WP_282374148.1 sodium:solute symporter -
  QI003_RS05685 (QI003_05685) - 1135553..1135753 (-) 201 WP_282374149.1 DUF3311 domain-containing protein -
  QI003_RS05690 (QI003_05690) - 1135963..1136325 (-) 363 WP_282374150.1 hypothetical protein -
  QI003_RS05695 (QI003_05695) - 1136478..1137101 (+) 624 WP_014663448.1 TVP38/TMEM64 family protein -
  QI003_RS05700 (QI003_05700) lepB 1137103..1137609 (+) 507 WP_014663449.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22383.61 Da        Isoelectric Point: 7.3221

>NTDB_id=826595 QI003_RS05665 WP_282374146.1 1132035..1132613(+) (comK) [Bacillus stercoris strain BS21]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVSMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
HVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=826595 QI003_RS05665 WP_282374146.1 1132035..1132613(+) (comK) [Bacillus stercoris strain BS21]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGTGTGTTTTATGTCAGCATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCA
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCTCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGCTGC
CGATTTCCTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAGGACAGAATCGACCAC
CACGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

98.958

100

0.99