Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   SHN03_RS01835 Genome accession   NZ_CP138566
Coordinates   408455..409300 (+) Length   281 a.a.
NCBI ID   WP_001621659.1    Uniprot ID   -
Organism   Staphylococcus aureus strain AUSMDU00020487     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 403455..414300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SHN03_RS01820 - 403723..405564 (-) 1842 WP_031874980.1 bifunctional homocysteine S-methyltransferase/methylenetetrahydrofolate reductase -
  SHN03_RS01825 metC 405533..406693 (-) 1161 WP_000175862.1 cystathionine beta-lyase MetC -
  SHN03_RS01830 - 406690..407793 (-) 1104 WP_000655697.1 PLP-dependent transferase -
  SHN03_RS01835 spo0J 408455..409300 (+) 846 WP_001621659.1 ParB/RepB/Spo0J family partition protein Regulator
  SHN03_RS01840 - 409454..410335 (+) 882 WP_000373079.1 mechanosensitive ion channel family protein -
  SHN03_RS01845 - 410365..410568 (+) 204 WP_000157348.1 DUF951 domain-containing protein -
  SHN03_RS01850 ychF 410580..411677 (+) 1098 WP_031874981.1 redox-regulated ATPase YchF -
  SHN03_RS01855 - 411763..411954 (-) 192 WP_001052483.1 hypothetical protein -
  SHN03_RS01860 rpsF 412198..412494 (+) 297 WP_001261460.1 30S ribosomal protein S6 -
  SHN03_RS01865 ssbA 412515..413018 (+) 504 WP_000934799.1 single-stranded DNA-binding protein Machinery gene
  SHN03_RS01870 rpsR 413070..413312 (+) 243 WP_000897044.1 30S ribosomal protein S18 -

Sequence

Protein


Download         Length: 281 a.a.        Molecular weight: 32797.82 Da        Isoelectric Point: 10.0000

>NTDB_id=826595 SHN03_RS01835 WP_001621659.1 408455..409300(+) (spo0J) [Staphylococcus aureus strain AUSMDU00020487]
MSELSKSEDQRITKTKDEQIKQIDISDIKPNPYQPRKTFDENHLNDLADSIKQYGILQPIVLRKTVQGYYIVVGERRFRA
SKIAGLKYVSAIIKDLTDEDMMELAVIENLQREDLNAIEEAESYQRLMTDLKITQQEVAKRLSKSRPYIANMLRLLHLPK
KIADMVKDGRLTSAHGRTLLAIKDEQQMLRLAKRVVKEKWSVRYLENHVNELKNVSSKSETDKVDITKPKFIKQQERQLR
EQYGAKVDISIKKSVGKISFEFESQDDFVRIIEQLNRKYGK

Nucleotide


Download         Length: 846 bp        

>NTDB_id=826595 SHN03_RS01835 WP_001621659.1 408455..409300(+) (spo0J) [Staphylococcus aureus strain AUSMDU00020487]
GTGAGTGAATTGTCAAAAAGTGAAGATCAACGTATTACTAAAACAAAAGATGAACAAATTAAGCAAATAGATATATCGGA
TATCAAACCGAATCCGTATCAGCCCCGAAAAACTTTCGATGAAAATCATTTAAATGATTTGGCAGATTCAATTAAGCAAT
ATGGTATTTTGCAACCAATTGTGCTTAGAAAAACAGTTCAAGGTTATTACATTGTAGTTGGTGAAAGAAGGTTTAGAGCT
TCGAAAATTGCTGGTCTAAAATACGTATCAGCGATTATCAAAGATTTAACAGATGAAGATATGATGGAACTGGCGGTCAT
CGAAAATTTACAACGAGAAGACTTAAATGCGATTGAAGAAGCTGAAAGTTATCAACGTTTGATGACAGATTTGAAAATTA
CACAACAAGAAGTAGCGAAGCGATTGAGTAAGTCGCGCCCGTATATAGCGAATATGTTGAGGTTATTACATTTACCGAAA
AAGATTGCTGACATGGTAAAAGATGGGCGACTGACAAGTGCACATGGACGAACGTTATTGGCAATTAAAGATGAACAACA
AATGCTTAGGTTAGCGAAACGGGTTGTTAAAGAAAAGTGGAGTGTTAGATATTTAGAAAACCATGTTAATGAATTAAAAA
ATGTTTCGTCAAAGTCGGAAACAGACAAAGTAGATATAACTAAGCCTAAATTTATAAAGCAACAAGAACGACAGTTGCGA
GAACAGTATGGCGCAAAAGTAGATATATCGATAAAAAAATCAGTCGGCAAAATCTCATTTGAGTTTGAATCGCAAGATGA
CTTTGTGAGAATCATTGAACAATTAAATCGTAAGTATGGTAAATAG

Domains

Predicted by InterProScan.

ParB/Sulfiredoxin domain (ParB_N)

(22-109)

HTH domain found in ParB protein (HTH_ParB)

(161-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

40.996

92.883

0.381