Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   QI003_RS00245 Genome accession   NZ_CP124601
Coordinates   44564..44854 (-) Length   96 a.a.
NCBI ID   WP_003226760.1    Uniprot ID   A0A7G9PCZ4
Organism   Bacillus stercoris strain BS21     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 39564..49854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QI003_RS00205 (QI003_00205) darA 39587..39916 (+) 330 WP_003242755.1 cyclic di-AMP receptor DarA -
  QI003_RS00210 (QI003_00210) - 39929..40369 (+) 441 WP_071582142.1 YaaR family protein -
  QI003_RS00215 (QI003_00215) holB 40381..41370 (+) 990 WP_069840443.1 DNA polymerase III subunit delta' -
  QI003_RS00220 (QI003_00220) ricT 41373..42200 (+) 828 WP_003226767.1 competence/sporulation regulator complex protein RicT -
  QI003_RS00225 (QI003_00225) yabA 42215..42574 (+) 360 WP_003218308.1 replication initiation-control protein YabA -
  QI003_RS00230 (QI003_00230) - 42633..43376 (+) 744 WP_282373894.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  QI003_RS00235 (QI003_00235) - 43363..43662 (+) 300 WP_014662477.1 GIY-YIG nuclease family protein -
  QI003_RS00240 (QI003_00240) rsmI 43637..44515 (+) 879 WP_014662478.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  QI003_RS00245 (QI003_00245) abrB 44564..44854 (-) 291 WP_003226760.1 transition state genes transcriptional regulator AbrB Regulator
  QI003_RS00250 (QI003_00250) metG 45349..47343 (+) 1995 WP_071582140.1 methionine--tRNA ligase -
  QI003_RS00255 (QI003_00255) - 47422..48189 (+) 768 WP_014475570.1 TatD family hydrolase -
  QI003_RS00260 (QI003_00260) - 48345..49658 (+) 1314 WP_040081079.1 ubiquitin-like domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10772.62 Da        Isoelectric Point: 6.3482

>NTDB_id=826579 QI003_RS00245 WP_003226760.1 44564..44854(-) (abrB) [Bacillus stercoris strain BS21]
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNLK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=826579 QI003_RS00245 WP_003226760.1 44564..44854(-) (abrB) [Bacillus stercoris strain BS21]
ATGTTTATGAAATCTACTGGTATTGTACGTAAAGTTGATGAATTAGGACGTGTAGTTATTCCTATCGAATTGCGTCGTAC
TCTCGGAATCGCAGAAAAAGATGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGTAAAGAAGGC
GCTGAGCAAATCATCAGCGAAATCCAAAACCAGCTTCAAAACCTTAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G9PCZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

100

100

1