Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   QI003_RS00020 Genome accession   NZ_CP124601
Coordinates   3214..4326 (+) Length   370 a.a.
NCBI ID   WP_040081112.1    Uniprot ID   -
Organism   Bacillus stercoris strain BS21     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..9326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QI003_RS00005 (QI003_00005) dnaA 185..1525 (+) 1341 WP_003242674.1 chromosomal replication initiator protein DnaA -
  QI003_RS00010 (QI003_00010) dnaN 1716..2852 (+) 1137 WP_014662455.1 DNA polymerase III subunit beta -
  QI003_RS00015 (QI003_00015) rlbA 2983..3198 (+) 216 WP_003219264.1 ribosome maturation protein RlbA -
  QI003_RS00020 (QI003_00020) recF 3214..4326 (+) 1113 WP_040081112.1 DNA replication/repair protein RecF Machinery gene
  QI003_RS00025 (QI003_00025) remB 4344..4589 (+) 246 WP_003219266.1 extracellular matrix regulator RemB -
  QI003_RS00030 (QI003_00030) gyrB 4643..6559 (+) 1917 WP_014662457.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  QI003_RS00035 (QI003_00035) gyrA 6770..9235 (+) 2466 WP_014662458.1 DNA topoisomerase (ATP-hydrolyzing) subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42276.29 Da        Isoelectric Point: 7.3660

>NTDB_id=826577 QI003_RS00020 WP_040081112.1 3214..4326(+) (recF) [Bacillus stercoris strain BS21]
MYIQNLELTSYRNYDHAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDKDYAKIEGRVMKQNGA
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQR
NHFLKQLQTRKQTDRTMLDVLTDQLVEVAAKVVVKRLQFTAQLEKWAQPVHAGISRGLEELTLKYHTALDVSDPVDLSKI
GDSYQEAFSKLREKEIERGVTLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHETLRQAGMFRVQNGALVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=826577 QI003_RS00020 WP_040081112.1 3214..4326(+) (recF) [Bacillus stercoris strain BS21]
TTGTATATCCAGAACTTAGAACTGACATCTTACCGCAACTACGACCATGCTGAACTTCAATTTGAAAATAAAGTAAATGT
GATCATCGGTGAAAACGCCCAGGGGAAGACAAACCTCATGGAGGCGATCTATGTCTTGTCTATGGCGAAATCGCACAGGA
CATCAAATGACAAAGAACTTATACGGTGGGACAAAGACTATGCTAAAATAGAGGGAAGAGTGATGAAGCAAAACGGGGCG
ATCCCGATGCAGCTCGTCATCTCCAAAAAAGGTAAAAAGGGCAAGGTCAATCATATTGAACAGCAAAAGCTCAGCCAGTA
TGTCGGGGCCCTCAACACCATTATGTTTGCGCCGGAAGATTTAAATCTTGTAAAGGGAAGCCCTCAAGTGAGAAGGCGGT
TTCTTGACATGGAAATCGGACAGGTTTCTCCCGTCTACCTTCATGACCTTTCTCTTTACCAGAAAATCCTTTCCCAGCGG
AATCATTTTTTAAAACAGCTGCAAACAAGAAAACAAACAGACCGGACGATGCTCGATGTTTTGACCGATCAGCTTGTGGA
AGTTGCAGCAAAAGTCGTCGTAAAACGCCTGCAGTTTACAGCACAGCTCGAAAAATGGGCGCAGCCCGTCCATGCAGGCA
TCTCAAGAGGGCTTGAAGAACTGACCTTGAAGTACCATACAGCTCTTGATGTATCAGATCCCGTAGACTTGTCGAAAATA
GGAGATAGCTATCAAGAAGCGTTTTCTAAATTAAGAGAAAAAGAAATCGAGCGCGGTGTTACTTTGTCAGGGCCTCATCG
TGACGATGTCCTTTTCTATGTGAACGGACGCGATGTGCAGACGTATGGTTCTCAAGGACAGCAGCGAACGACGGCGTTGT
CCCTTAAGCTGGCGGAGATTGACCTGATCCATGAAGAAATCGGAGAATATCCCATTTTACTATTGGATGATGTACTGAGT
GAACTAGATGATTATCGCCAGTCACACTTGCTTCATACGATCCAAGGCCGTGTACAAACGTTTGTCACAACGACAAGCGT
TGATGGCATTGATCACGAAACCTTACGTCAAGCAGGAATGTTCCGTGTGCAAAATGGTGCGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

99.459

100

0.995