Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   SE698_RS07800 Genome accession   NZ_CP138428
Coordinates   1648112..1648741 (+) Length   209 a.a.
NCBI ID   WP_000793792.1    Uniprot ID   -
Organism   Escherichia coli strain 6EVA     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1643112..1653741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE698_RS07780 ycbZ 1643501..1645261 (-) 1761 WP_000156495.1 AAA family ATPase -
  SE698_RS07785 matP 1645447..1645899 (+) 453 WP_000877158.1 macrodomain Ter protein MatP -
  SE698_RS07790 ompA 1645975..1647027 (-) 1053 WP_000750419.1 porin OmpA -
  SE698_RS07795 sulA 1647384..1647893 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  SE698_RS07800 sxy/tfoX 1648112..1648741 (+) 630 WP_000793792.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  SE698_RS07805 yccS 1648704..1650866 (-) 2163 WP_000875050.1 YccS family putative transporter -
  SE698_RS07810 yccF 1650876..1651322 (-) 447 WP_001261235.1 YccF domain-containing protein -
  SE698_RS07815 helD 1651445..1653499 (+) 2055 WP_001491169.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24174.04 Da        Isoelectric Point: 9.2180

>NTDB_id=826449 SE698_RS07800 WP_000793792.1 1648112..1648741(+) (sxy/tfoX) [Escherichia coli strain 6EVA]
MKNLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=826449 SE698_RS07800 WP_000793792.1 1648112..1648741(+) (sxy/tfoX) [Escherichia coli strain 6EVA]
ATGAAAAACCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGGATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTAGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995