Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   K9V56_RS17610 Genome accession   NZ_CP124551
Coordinates   4167271..4168395 (-) Length   374 a.a.
NCBI ID   WP_171828917.1    Uniprot ID   -
Organism   Kinneretia aquatilis strain DH15     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4162271..4173395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K9V56_RS17590 (K9V56_017590) - 4162529..4164481 (-) 1953 WP_171828914.1 sensor histidine kinase -
  K9V56_RS17595 (K9V56_017595) - 4164478..4164726 (-) 249 WP_102767837.1 PP0621 family protein -
  K9V56_RS17600 (K9V56_017600) - 4164790..4165683 (-) 894 WP_171828915.1 inner membrane protein YpjD -
  K9V56_RS17605 (K9V56_017605) ffh 4165734..4167152 (+) 1419 WP_171828916.1 signal recognition particle protein -
  K9V56_RS17610 (K9V56_017610) pilA 4167271..4168395 (-) 1125 WP_171828917.1 signal recognition particle-docking protein FtsY Machinery gene
  K9V56_RS17615 (K9V56_017615) - 4168714..4169619 (+) 906 WP_171828918.1 delta(1)-pyrroline-2-carboxylate reductase family protein -
  K9V56_RS17625 (K9V56_017625) - 4170103..4173300 (-) 3198 WP_171828919.1 efflux RND transporter permease subunit -

Sequence

Protein


Download         Length: 374 a.a.        Molecular weight: 39319.24 Da        Isoelectric Point: 5.5247

>NTDB_id=826438 K9V56_RS17610 WP_171828917.1 4167271..4168395(-) (pilA) [Kinneretia aquatilis strain DH15]
MFSFFKKKFSSSPAPEPAPVAASAPAPAPASAPMPAPELVPELTPAAEPAALPTPAPAAAPVATVPVAAEAPAPEPRRSW
IDKLRQGLRKTGSSIAQVFTGTQIDDALYEELEEALLMADTGVKATEFLLTDLKRRVKEAKATDPQAVRGLLVEALAELL
KPLEKSLAVGQHSPTVMMVVGVNGAGKTTSIGKLTRHLAEADQKVLLAAADTFRAAAREQLSVWADRTQVQIISQEGGDP
ASVTFDAVAAGRARGCDVVLADTAGRLPTQLHLMEELKKIKRVITKAQADAPHEVLLVVDGNTGQNALSQVKSFDDALGL
TGLIVTKLDGTAKGGVLAAIARERAIPVYFIGVGEKLEDLQTFNAREFAQALLE

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=826438 K9V56_RS17610 WP_171828917.1 4167271..4168395(-) (pilA) [Kinneretia aquatilis strain DH15]
ATGTTCAGTTTCTTCAAGAAAAAGTTTTCCAGCAGCCCAGCACCTGAGCCCGCTCCTGTTGCGGCTTCGGCCCCGGCCCC
AGCTCCGGCCTCGGCTCCGATGCCCGCGCCTGAGTTGGTGCCGGAGTTGACACCTGCGGCCGAGCCCGCTGCGTTGCCAA
CGCCAGCCCCGGCGGCCGCTCCGGTGGCGACCGTGCCCGTGGCCGCAGAAGCCCCGGCGCCCGAGCCGCGCCGCAGCTGG
ATTGACAAGCTGCGCCAGGGCCTTCGCAAAACTGGCTCGAGCATCGCCCAGGTCTTCACCGGCACGCAGATCGACGATGC
GCTGTACGAGGAGCTGGAAGAAGCGCTGCTGATGGCCGACACCGGCGTCAAGGCGACCGAGTTCTTGTTGACCGATCTGA
AACGCCGCGTCAAGGAAGCCAAGGCGACCGACCCTCAGGCCGTGCGCGGTCTGCTGGTCGAGGCTCTGGCCGAACTGCTC
AAGCCGCTGGAGAAAAGCCTGGCCGTGGGCCAGCACAGCCCGACGGTGATGATGGTGGTGGGTGTCAACGGCGCCGGCAA
GACCACCAGCATCGGCAAACTGACCCGCCATCTGGCCGAGGCCGACCAAAAAGTGCTGCTGGCGGCGGCCGACACCTTCC
GCGCGGCCGCGCGTGAGCAGCTGTCGGTCTGGGCCGACCGCACCCAGGTGCAGATCATCAGCCAGGAGGGCGGTGACCCG
GCCTCGGTGACCTTCGATGCCGTGGCCGCCGGCCGCGCGCGCGGCTGCGATGTGGTGCTGGCCGACACGGCCGGCCGCCT
GCCGACCCAGCTGCACCTGATGGAAGAGCTGAAGAAGATCAAGCGCGTGATCACCAAGGCGCAGGCCGATGCACCGCACG
AGGTGCTGCTGGTGGTGGACGGCAACACCGGCCAGAACGCGCTCAGTCAGGTCAAGTCCTTCGACGATGCACTGGGCCTG
ACCGGCCTGATCGTCACCAAGCTGGACGGCACGGCCAAGGGCGGCGTGCTGGCGGCGATTGCCCGCGAGCGGGCCATCCC
GGTCTACTTCATCGGCGTGGGCGAGAAGCTGGAAGACCTGCAGACCTTCAATGCACGCGAGTTCGCGCAGGCCTTGTTGG
AGTGA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(174-373)

SRP54-type protein, helical bundle domain (SRP54_N)

(92-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

47.63

100

0.537