Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   SE700_RS19730 Genome accession   NZ_CP138427
Coordinates   3910305..3910934 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain 21EVA     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3905305..3915934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE700_RS19715 helD 3905547..3907601 (-) 2055 WP_001295354.1 DNA helicase IV -
  SE700_RS19720 yccF 3907724..3908170 (+) 447 WP_001261235.1 YccF domain-containing protein -
  SE700_RS19725 yccS 3908180..3910342 (+) 2163 WP_251077461.1 YccS family putative transporter -
  SE700_RS19730 sxy/tfoX 3910305..3910934 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  SE700_RS19735 sulA 3911153..3911662 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  SE700_RS19740 ompA 3912019..3913059 (+) 1041 WP_000750416.1 porin OmpA -
  SE700_RS19745 matP 3913135..3913587 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  SE700_RS19750 ycbZ 3913773..3915533 (+) 1761 WP_000156518.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=826413 SE700_RS19730 WP_000839153.1 3910305..3910934(-) (sxy/tfoX) [Escherichia coli strain 21EVA]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=826413 SE700_RS19730 WP_000839153.1 3910305..3910934(-) (sxy/tfoX) [Escherichia coli strain 21EVA]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1