Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | QJV49_RS10275 | Genome accession | NZ_CP124538 |
| Coordinates | 2029713..2031959 (+) | Length | 748 a.a. |
| NCBI ID | WP_225511538.1 | Uniprot ID | A0AA49EVK1 |
| Organism | Lactococcus sp. NH2-7C | ||
| Function | degradation of ComX (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2024713..2036959
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QJV49_RS10260 (QJV49_10260) | dnaG | 2025666..2027579 (+) | 1914 | WP_225511537.1 | DNA primase | - |
| QJV49_RS10265 (QJV49_10265) | rpoD | 2027839..2028999 (+) | 1161 | WP_026138868.1 | RNA polymerase sigma factor RpoD | - |
| QJV49_RS10270 (QJV49_10270) | - | 2029324..2029662 (+) | 339 | WP_003130824.1 | hypothetical protein | - |
| QJV49_RS10275 (QJV49_10275) | clpC | 2029713..2031959 (+) | 2247 | WP_225511538.1 | ATP-dependent Clp protease ATP-binding subunit | Regulator |
| QJV49_RS10280 (QJV49_10280) | - | 2032258..2032728 (-) | 471 | WP_225511539.1 | Rrf2 family transcriptional regulator | - |
| QJV49_RS10285 (QJV49_10285) | gap | 2032901..2033914 (+) | 1014 | WP_003130818.1 | type I glyceraldehyde-3-phosphate dehydrogenase | - |
| QJV49_RS10290 (QJV49_10290) | def | 2034057..2034692 (-) | 636 | WP_003130816.1 | peptide deformylase | - |
| QJV49_RS10295 (QJV49_10295) | - | 2034846..2035301 (+) | 456 | WP_225511540.1 | RNA pyrophosphohydrolase | - |
Sequence
Protein
Download Length: 748 a.a. Molecular weight: 83160.91 Da Isoelectric Point: 4.7673
>NTDB_id=826352 QJV49_RS10275 WP_225511538.1 2029713..2031959(+) (clpC) [Lactococcus sp. NH2-7C]
MLCQNCNINEATIHLYTSVNGQKKQIDLCQNCYQIMKSGGQEALFGAGNASNGNSDEPFNPFNDIFSALHGQDFNGAAST
QTPPTQTGGRGPRGPQNPRAKQPKGMLEEFGINITESARRGEIDPVIGRDEEIKRVIEILNRRTKNNPVLIGEPGVGKTA
VVEGLAQKIVDGDVPQKLQNKEVIRLDVVSLVQGTGIRGQFEERMQKLMDEIRKRNDVIMFIDEIHEIVGAGSAGDGNMD
AGNILKPALARGELQLVGATTLNEYRIIEKDAALERRMQPVKVDEPSVEETITILRGIQPRYEDYHHVKYTDEAIEAAAH
LSNRYIQDRFLPDKAIDLLDESGSKKNLTLKFVDPEDINRRIAEAEKKKNEATQAEDFEKAAHFRDQISKLRELQNHEVS
DEESPVITEKDIEQIVEQKTQIPVGDLKEKEQTQLINLADDLKAHVIGQDEAVDKIAKAIRRSRVGLGKPNRPIGSFLFV
GPTGVGKTELAKQLAKELFGSSESMIRFDMSEYMEKHSVAKLIGAPPGYVGYEEAGQLTERVRRNPYSLILLDEIEKAHP
DVMHMFLQILEDGRLTDAQGRTVSFKDSLIIMTSNAGTGKVEASVGFGAAREGRTKSVLGQLGDFFSPEFMNRFDGIIEF
SALSKENLLKIVDLMLDEVNEQIGRNDIHLSVTQAAKEKLVDLGYNPAMGARPLRRTIQENIEDSIADFYIEHPEYKELV
ADLIDDKIVISNQAQEAAETTDEEVPAE
MLCQNCNINEATIHLYTSVNGQKKQIDLCQNCYQIMKSGGQEALFGAGNASNGNSDEPFNPFNDIFSALHGQDFNGAAST
QTPPTQTGGRGPRGPQNPRAKQPKGMLEEFGINITESARRGEIDPVIGRDEEIKRVIEILNRRTKNNPVLIGEPGVGKTA
VVEGLAQKIVDGDVPQKLQNKEVIRLDVVSLVQGTGIRGQFEERMQKLMDEIRKRNDVIMFIDEIHEIVGAGSAGDGNMD
AGNILKPALARGELQLVGATTLNEYRIIEKDAALERRMQPVKVDEPSVEETITILRGIQPRYEDYHHVKYTDEAIEAAAH
LSNRYIQDRFLPDKAIDLLDESGSKKNLTLKFVDPEDINRRIAEAEKKKNEATQAEDFEKAAHFRDQISKLRELQNHEVS
DEESPVITEKDIEQIVEQKTQIPVGDLKEKEQTQLINLADDLKAHVIGQDEAVDKIAKAIRRSRVGLGKPNRPIGSFLFV
GPTGVGKTELAKQLAKELFGSSESMIRFDMSEYMEKHSVAKLIGAPPGYVGYEEAGQLTERVRRNPYSLILLDEIEKAHP
DVMHMFLQILEDGRLTDAQGRTVSFKDSLIIMTSNAGTGKVEASVGFGAAREGRTKSVLGQLGDFFSPEFMNRFDGIIEF
SALSKENLLKIVDLMLDEVNEQIGRNDIHLSVTQAAKEKLVDLGYNPAMGARPLRRTIQENIEDSIADFYIEHPEYKELV
ADLIDDKIVISNQAQEAAETTDEEVPAE
Nucleotide
Download Length: 2247 bp
>NTDB_id=826352 QJV49_RS10275 WP_225511538.1 2029713..2031959(+) (clpC) [Lactococcus sp. NH2-7C]
ATGCTTTGTCAAAATTGTAATATTAATGAAGCTACGATTCACCTTTACACAAGTGTAAATGGTCAGAAAAAACAAATTGA
TTTGTGCCAAAACTGTTATCAAATTATGAAATCTGGCGGTCAAGAAGCTTTATTTGGCGCAGGAAATGCCTCAAATGGAA
ATTCTGATGAACCATTTAATCCATTTAATGATATCTTTAGTGCTTTGCACGGTCAAGATTTTAATGGAGCAGCAAGCACT
CAAACTCCACCAACACAAACAGGTGGACGTGGTCCGCGCGGTCCGCAAAATCCTCGGGCAAAACAACCTAAAGGAATGTT
AGAAGAATTTGGAATTAACATTACAGAGTCAGCTCGTCGTGGTGAAATTGACCCAGTGATTGGGCGTGATGAAGAAATCA
AACGGGTCATTGAGATTTTAAATCGCAGGACTAAGAATAATCCTGTGTTAATTGGTGAACCTGGTGTTGGTAAAACAGCA
GTTGTTGAAGGTTTAGCGCAAAAAATTGTGGACGGAGATGTGCCACAAAAACTACAAAATAAAGAAGTGATTCGTCTTGA
TGTTGTTTCTCTTGTTCAAGGAACAGGAATTCGGGGTCAATTTGAAGAACGAATGCAAAAATTAATGGATGAAATCAGAA
AACGTAATGATGTGATTATGTTTATTGATGAAATCCATGAAATTGTTGGTGCTGGTTCTGCCGGAGATGGCAATATGGAT
GCGGGAAATATCCTAAAACCTGCGCTTGCGCGTGGTGAGCTTCAATTGGTCGGAGCAACAACGCTCAATGAATATCGCAT
CATTGAAAAAGATGCTGCGCTTGAACGTCGGATGCAACCTGTCAAAGTTGATGAACCATCAGTTGAAGAAACGATTACGA
TTCTTCGAGGGATTCAACCACGCTATGAAGATTATCATCACGTGAAATACACTGATGAGGCGATTGAAGCAGCTGCTCAT
TTGTCAAATCGTTACATTCAAGATCGTTTCTTACCAGATAAAGCCATTGACCTTTTGGATGAGTCGGGTTCTAAGAAAAA
TCTAACATTGAAATTTGTTGATCCTGAAGATATCAATCGTCGAATTGCAGAAGCAGAAAAGAAGAAAAATGAAGCGACTC
AAGCTGAAGATTTTGAAAAAGCCGCTCATTTCCGTGATCAAATCAGCAAACTTCGTGAATTGCAAAATCATGAGGTTTCA
GATGAAGAAAGTCCAGTCATCACTGAGAAAGATATTGAGCAAATTGTGGAACAAAAAACTCAAATTCCAGTTGGTGATTT
GAAAGAAAAAGAACAAACCCAATTGATTAATTTGGCTGATGATTTGAAAGCACATGTGATTGGTCAGGATGAAGCAGTGG
ATAAGATTGCTAAAGCTATCCGTCGTTCTCGTGTGGGACTTGGTAAACCTAATCGTCCAATTGGATCTTTCCTTTTCGTT
GGTCCAACAGGTGTTGGTAAAACAGAACTTGCTAAGCAATTGGCTAAAGAATTATTTGGCTCAAGCGAAAGTATGATTCG
TTTTGACATGTCGGAATACATGGAAAAACATTCGGTGGCCAAATTGATTGGAGCCCCTCCAGGATATGTGGGTTATGAAG
AAGCTGGTCAATTGACTGAACGTGTTCGTCGTAATCCCTACAGTTTGATTTTATTAGATGAAATCGAAAAAGCACATCCA
GATGTGATGCACATGTTCTTGCAAATTCTTGAAGATGGACGTCTGACAGACGCACAAGGACGGACAGTATCCTTTAAAGA
TAGTTTGATTATTATGACTTCTAATGCCGGAACTGGTAAAGTTGAAGCCTCTGTAGGATTTGGTGCTGCTCGTGAGGGAC
GAACTAAATCAGTGCTTGGTCAACTTGGCGATTTCTTTAGCCCTGAATTCATGAACCGTTTTGACGGAATTATTGAATTC
TCTGCTTTGAGCAAAGAAAACCTCCTTAAAATTGTTGATTTGATGCTTGATGAAGTCAACGAACAAATTGGACGTAATGA
TATTCATCTTAGTGTCACTCAAGCAGCAAAAGAAAAATTAGTTGATTTAGGTTACAATCCAGCAATGGGTGCAAGACCAC
TTCGTAGAACGATTCAAGAAAATATCGAAGATTCAATTGCTGACTTCTATATTGAACATCCTGAGTACAAAGAATTGGTT
GCTGATTTGATTGATGATAAAATTGTTATCTCTAATCAAGCTCAAGAAGCAGCAGAAACGACTGATGAAGAAGTTCCTGC
TGAATAA
ATGCTTTGTCAAAATTGTAATATTAATGAAGCTACGATTCACCTTTACACAAGTGTAAATGGTCAGAAAAAACAAATTGA
TTTGTGCCAAAACTGTTATCAAATTATGAAATCTGGCGGTCAAGAAGCTTTATTTGGCGCAGGAAATGCCTCAAATGGAA
ATTCTGATGAACCATTTAATCCATTTAATGATATCTTTAGTGCTTTGCACGGTCAAGATTTTAATGGAGCAGCAAGCACT
CAAACTCCACCAACACAAACAGGTGGACGTGGTCCGCGCGGTCCGCAAAATCCTCGGGCAAAACAACCTAAAGGAATGTT
AGAAGAATTTGGAATTAACATTACAGAGTCAGCTCGTCGTGGTGAAATTGACCCAGTGATTGGGCGTGATGAAGAAATCA
AACGGGTCATTGAGATTTTAAATCGCAGGACTAAGAATAATCCTGTGTTAATTGGTGAACCTGGTGTTGGTAAAACAGCA
GTTGTTGAAGGTTTAGCGCAAAAAATTGTGGACGGAGATGTGCCACAAAAACTACAAAATAAAGAAGTGATTCGTCTTGA
TGTTGTTTCTCTTGTTCAAGGAACAGGAATTCGGGGTCAATTTGAAGAACGAATGCAAAAATTAATGGATGAAATCAGAA
AACGTAATGATGTGATTATGTTTATTGATGAAATCCATGAAATTGTTGGTGCTGGTTCTGCCGGAGATGGCAATATGGAT
GCGGGAAATATCCTAAAACCTGCGCTTGCGCGTGGTGAGCTTCAATTGGTCGGAGCAACAACGCTCAATGAATATCGCAT
CATTGAAAAAGATGCTGCGCTTGAACGTCGGATGCAACCTGTCAAAGTTGATGAACCATCAGTTGAAGAAACGATTACGA
TTCTTCGAGGGATTCAACCACGCTATGAAGATTATCATCACGTGAAATACACTGATGAGGCGATTGAAGCAGCTGCTCAT
TTGTCAAATCGTTACATTCAAGATCGTTTCTTACCAGATAAAGCCATTGACCTTTTGGATGAGTCGGGTTCTAAGAAAAA
TCTAACATTGAAATTTGTTGATCCTGAAGATATCAATCGTCGAATTGCAGAAGCAGAAAAGAAGAAAAATGAAGCGACTC
AAGCTGAAGATTTTGAAAAAGCCGCTCATTTCCGTGATCAAATCAGCAAACTTCGTGAATTGCAAAATCATGAGGTTTCA
GATGAAGAAAGTCCAGTCATCACTGAGAAAGATATTGAGCAAATTGTGGAACAAAAAACTCAAATTCCAGTTGGTGATTT
GAAAGAAAAAGAACAAACCCAATTGATTAATTTGGCTGATGATTTGAAAGCACATGTGATTGGTCAGGATGAAGCAGTGG
ATAAGATTGCTAAAGCTATCCGTCGTTCTCGTGTGGGACTTGGTAAACCTAATCGTCCAATTGGATCTTTCCTTTTCGTT
GGTCCAACAGGTGTTGGTAAAACAGAACTTGCTAAGCAATTGGCTAAAGAATTATTTGGCTCAAGCGAAAGTATGATTCG
TTTTGACATGTCGGAATACATGGAAAAACATTCGGTGGCCAAATTGATTGGAGCCCCTCCAGGATATGTGGGTTATGAAG
AAGCTGGTCAATTGACTGAACGTGTTCGTCGTAATCCCTACAGTTTGATTTTATTAGATGAAATCGAAAAAGCACATCCA
GATGTGATGCACATGTTCTTGCAAATTCTTGAAGATGGACGTCTGACAGACGCACAAGGACGGACAGTATCCTTTAAAGA
TAGTTTGATTATTATGACTTCTAATGCCGGAACTGGTAAAGTTGAAGCCTCTGTAGGATTTGGTGCTGCTCGTGAGGGAC
GAACTAAATCAGTGCTTGGTCAACTTGGCGATTTCTTTAGCCCTGAATTCATGAACCGTTTTGACGGAATTATTGAATTC
TCTGCTTTGAGCAAAGAAAACCTCCTTAAAATTGTTGATTTGATGCTTGATGAAGTCAACGAACAAATTGGACGTAATGA
TATTCATCTTAGTGTCACTCAAGCAGCAAAAGAAAAATTAGTTGATTTAGGTTACAATCCAGCAATGGGTGCAAGACCAC
TTCGTAGAACGATTCAAGAAAATATCGAAGATTCAATTGCTGACTTCTATATTGAACATCCTGAGTACAAAGAATTGGTT
GCTGATTTGATTGATGATAAAATTGTTATCTCTAATCAAGCTCAAGAAGCAGCAGAAACGACTGATGAAGAAGTTCCTGC
TGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Lactococcus lactis subsp. cremoris KW2 |
97.861 |
100 |
0.979 |
| clpE | Streptococcus mutans UA159 |
76.424 |
100 |
0.771 |
| clpE | Streptococcus pneumoniae Rx1 |
75.543 |
98.396 |
0.743 |
| clpE | Streptococcus pneumoniae D39 |
75.543 |
98.396 |
0.743 |
| clpE | Streptococcus pneumoniae R6 |
75.543 |
98.396 |
0.743 |
| clpE | Streptococcus pneumoniae TIGR4 |
75.543 |
98.396 |
0.743 |
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
51.824 |
87.968 |
0.456 |
| clpC | Streptococcus pneumoniae D39 |
46.795 |
83.422 |
0.39 |
| clpC | Streptococcus pneumoniae Rx1 |
46.795 |
83.422 |
0.39 |
| clpC | Streptococcus pneumoniae TIGR4 |
46.795 |
83.422 |
0.39 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
47.471 |
81.952 |
0.389 |
| clpC | Streptococcus thermophilus LMD-9 |
45.942 |
82.353 |
0.378 |
| clpC | Streptococcus mutans UA159 |
45.631 |
82.62 |
0.377 |
| clpC | Streptococcus thermophilus LMG 18311 |
45.779 |
82.353 |
0.377 |