Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   QJV49_RS06610 Genome accession   NZ_CP124538
Coordinates   1317055..1318083 (-) Length   342 a.a.
NCBI ID   WP_225512967.1    Uniprot ID   A0AA49ETX1
Organism   Lactococcus sp. NH2-7C     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1312055..1323083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJV49_RS06585 (QJV49_06585) - 1313141..1313998 (-) 858 WP_225512965.1 Rgg/GadR/MutR family transcriptional regulator -
  QJV49_RS06590 (QJV49_06590) - 1314109..1315248 (-) 1140 WP_012898644.1 MFS transporter -
  QJV49_RS06595 (QJV49_06595) kwcM 1315245..1316138 (-) 894 WP_225512979.1 KxxxW cyclic peptide radical SAM maturase -
  QJV49_RS06600 (QJV49_06600) - 1316145..1316552 (-) 408 WP_225512966.1 hypothetical protein -
  QJV49_RS06605 (QJV49_06605) - 1316620..1316733 (-) 114 WP_011836076.1 KxxxW-cyclized peptide pheromone -
  QJV49_RS06610 (QJV49_06610) sepM 1317055..1318083 (-) 1029 WP_225512967.1 SepM family pheromone-processing serine protease Regulator
  QJV49_RS06615 (QJV49_06615) coaD 1318070..1318567 (-) 498 WP_010906348.1 pantetheine-phosphate adenylyltransferase -
  QJV49_RS06620 (QJV49_06620) rsmD 1318615..1319154 (-) 540 WP_225512968.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  QJV49_RS06625 (QJV49_06625) - 1319325..1320545 (-) 1221 WP_225512969.1 MFS transporter -
  QJV49_RS06630 (QJV49_06630) lmrP 1320627..1321853 (-) 1227 WP_225512970.1 multidrug efflux MFS transporter LmrP -

Sequence

Protein


Download         Length: 342 a.a.        Molecular weight: 37398.05 Da        Isoelectric Point: 9.9183

>NTDB_id=826340 QJV49_RS06610 WP_225512967.1 1317055..1318083(-) (sepM) [Lactococcus sp. NH2-7C]
MKKNKKLNPKIKWGISIGLIIIALLVLVYPTNYYVEMPGTTEPLGKMVKVEGKKDEHKGDFFLTTVQIARANLATMIYSH
FNSFTSIYSEQEMTGGLNDAQFNRVNQFYMETAQNTAIYQAFKLANKPYELKYEGVYVLDIAKNSTFKNKLELADTITAV
NGQQFTSSADMIAYVSKQKVGDSVTIEYTRIDGTKHKSTGKYIKIANGKTGIGISLVDHTEVVTNPKVTVNAGSIGGPSA
GMMFTLEIYSQLTGKDLRNGREIAGTGTIEHDGSIGQIGGVDKKVATASKEGAKVFLVPDSGTKKESSNNYLGAKAAAKK
LKTKMKIVPVKTIQDALDYLEK

Nucleotide


Download         Length: 1029 bp        

>NTDB_id=826340 QJV49_RS06610 WP_225512967.1 1317055..1318083(-) (sepM) [Lactococcus sp. NH2-7C]
ATGAAAAAAAATAAAAAACTTAATCCCAAAATAAAATGGGGAATCTCAATTGGTCTAATTATTATTGCTTTACTTGTTTT
AGTCTATCCAACTAATTACTATGTAGAGATGCCTGGAACAACCGAGCCCTTAGGAAAAATGGTCAAAGTTGAAGGCAAAA
AAGATGAACATAAAGGTGATTTTTTCCTGACGACTGTCCAAATTGCACGAGCAAATCTTGCTACAATGATTTACAGCCAT
TTTAATAGTTTTACAAGCATTTACAGTGAGCAAGAAATGACTGGAGGTCTTAATGACGCACAGTTCAACCGTGTCAACCA
GTTTTACATGGAAACCGCACAGAATACAGCGATTTATCAAGCTTTTAAATTAGCTAATAAACCTTATGAACTTAAATATG
AAGGCGTTTATGTCCTTGATATTGCCAAGAATTCGACCTTTAAAAATAAGCTAGAACTTGCAGATACGATTACAGCAGTC
AATGGTCAACAGTTTACATCAAGTGCCGACATGATTGCTTATGTTTCCAAACAAAAAGTCGGTGATTCAGTAACGATTGA
ATACACGAGAATTGACGGCACAAAGCACAAGTCAACTGGCAAATACATCAAAATTGCTAATGGCAAAACAGGAATTGGGA
TTAGCCTAGTTGACCATACTGAAGTCGTGACGAATCCGAAAGTTACTGTCAACGCGGGTTCAATTGGCGGTCCTTCTGCG
GGGATGATGTTTACACTAGAAATTTACAGTCAGTTGACAGGAAAAGATTTGCGAAACGGTCGCGAAATTGCTGGAACTGG
AACGATTGAACACGACGGAAGCATTGGCCAAATCGGCGGTGTTGATAAAAAAGTAGCCACAGCGAGTAAAGAAGGGGCAA
AAGTCTTCTTAGTGCCTGATTCAGGCACCAAAAAGGAAAGTAGCAACAATTACCTTGGAGCCAAAGCCGCCGCTAAAAAA
CTAAAAACGAAGATGAAAATCGTTCCCGTCAAAACAATTCAGGACGCTTTAGATTATTTAGAAAAATAA

Domains

Predicted by InterproScan.

PDZ domain (PDZ_2)

(134-194)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(227-338)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

48.986

100

0.494