Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QJV49_RS06165 Genome accession   NZ_CP124538
Coordinates   1236937..1238298 (-) Length   453 a.a.
NCBI ID   WP_225512522.1    Uniprot ID   A0AA49EYF0
Organism   Lactococcus sp. NH2-7C     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1231937..1243298
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJV49_RS06130 (QJV49_06130) - 1232490..1232984 (+) 495 WP_225512529.1 GNAT family N-acetyltransferase -
  QJV49_RS06135 (QJV49_06135) - 1233075..1233398 (-) 324 WP_225512528.1 DUF1048 domain-containing protein -
  QJV49_RS06140 (QJV49_06140) - 1233388..1233732 (-) 345 WP_225512527.1 DUF1048 domain-containing protein -
  QJV49_RS06145 (QJV49_06145) - 1233719..1234081 (-) 363 WP_225512526.1 PadR family transcriptional regulator -
  QJV49_RS06150 (QJV49_06150) - 1234202..1234831 (-) 630 WP_225512525.1 pyridoxamine 5'-phosphate oxidase family protein -
  QJV49_RS06155 (QJV49_06155) - 1234880..1235980 (-) 1101 WP_225512524.1 PIN/TRAM domain-containing protein -
  QJV49_RS06160 (QJV49_06160) - 1236227..1236925 (+) 699 WP_225512523.1 YoaK family protein -
  QJV49_RS06165 (QJV49_06165) radA 1236937..1238298 (-) 1362 WP_225512522.1 DNA repair protein RadA Machinery gene
  QJV49_RS06175 (QJV49_06175) rplQ 1238934..1239314 (-) 381 WP_003130558.1 50S ribosomal protein L17 -
  QJV49_RS06180 (QJV49_06180) - 1239333..1240271 (-) 939 WP_003130557.1 DNA-directed RNA polymerase subunit alpha -
  QJV49_RS06185 (QJV49_06185) rpsK 1240319..1240702 (-) 384 WP_010906297.1 30S ribosomal protein S11 -
  QJV49_RS06190 (QJV49_06190) rpsM 1240723..1241088 (-) 366 WP_003130555.1 30S ribosomal protein S13 -
  QJV49_RS06195 (QJV49_06195) rpmJ 1241106..1241222 (-) 117 WP_001808836.1 50S ribosomal protein L36 -
  QJV49_RS06200 (QJV49_06200) infA 1241276..1241494 (-) 219 WP_003130554.1 translation initiation factor IF-1 -
  QJV49_RS06205 (QJV49_06205) - 1241790..1242437 (-) 648 WP_010906298.1 adenylate kinase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49832.17 Da        Isoelectric Point: 5.0754

>NTDB_id=826327 QJV49_RS06165 WP_225512522.1 1236937..1238298(-) (radA) [Lactococcus sp. NH2-7C]
MAKKKSSFVCQNCGYKSAKYLGRCPNCGEWSSFVEEVEVQEVKNQRVSMTGERSKPMKLDEVELFDTPRIETDLDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLASRGRVLYVSGEESAQQIKLRAERLGDIDRDFYLYAETNMQSIRAEVE
RLKPNFLIIDSIQTIMTPEIQSTQGSVSQVREVTGELMQIAKTNDIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGER
NNTFRILRAVKNRFGSTNEIGIFEMQGHGLVEVTNPSEVFLEERLEGSTGSAIVCALEGTRPILVEIQALTTPTMFGNAK
RTTSGLDFNRVSLIMAVLEKRTGLLMQNQDAYLKSAGGVKLDEPAIDLAVAVAVASSYKELSTDASECFIGEIGLTGEIR
RVTRIEQRLNEAAKLGFKKVYAPKNSIVGIDIPEQIQVIGVTTLTECLKLVFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=826327 QJV49_RS06165 WP_225512522.1 1236937..1238298(-) (radA) [Lactococcus sp. NH2-7C]
ATGGCGAAGAAAAAATCATCATTTGTTTGTCAAAATTGTGGTTATAAGTCTGCAAAATACTTAGGACGTTGTCCAAACTG
TGGAGAATGGTCTTCTTTTGTTGAAGAAGTTGAAGTTCAAGAAGTTAAAAATCAACGTGTTTCAATGACTGGCGAACGTT
CAAAACCGATGAAGTTAGATGAAGTTGAATTATTTGATACTCCTCGGATTGAAACGGACTTAGATGAATTTAATCGAGTA
TTAGGAGGGGGTGTTGTTCCTGGTTCATTGGTTCTGATTGGAGGAGACCCTGGGATAGGTAAATCAACCTTACTTTTACA
GGTTTCTACTCAACTGGCTTCTAGAGGTCGCGTGCTTTATGTGAGTGGTGAAGAATCAGCCCAACAAATTAAATTAAGAG
CTGAGCGTTTAGGAGATATTGACCGTGACTTTTATCTCTATGCTGAAACAAATATGCAGTCGATTCGTGCAGAAGTTGAA
CGTTTAAAACCTAACTTCCTAATTATTGACTCAATACAAACAATCATGACACCAGAAATTCAATCAACACAAGGATCTGT
AAGTCAAGTTCGTGAAGTAACTGGTGAATTGATGCAAATTGCTAAAACGAATGATATTGCAACCTTTATTGTTGGACATG
TGACCAAAGAAGGGCAATTGGCTGGTCCAAGAATGTTGGAGCACATGGTTGATACGGTGCTCTATTTTGAAGGAGAACGA
AATAATACATTTCGAATTCTTCGGGCTGTAAAAAATCGTTTTGGTTCAACGAATGAAATTGGAATTTTTGAGATGCAGGG
TCATGGATTGGTCGAAGTAACTAATCCTTCAGAGGTCTTTTTAGAAGAACGCTTAGAGGGTTCAACTGGATCTGCGATTG
TTTGTGCACTTGAAGGAACACGTCCTATATTAGTTGAAATACAAGCACTGACGACACCGACAATGTTTGGGAATGCTAAA
AGGACGACCTCAGGCCTAGATTTTAATCGTGTGAGTTTAATAATGGCGGTACTTGAGAAGAGAACGGGGCTATTGATGCA
AAATCAAGATGCCTATCTCAAATCTGCAGGGGGAGTAAAGTTAGATGAGCCAGCTATTGACCTTGCAGTTGCGGTTGCTG
TGGCTTCAAGTTATAAAGAACTTTCGACAGATGCAAGTGAATGTTTTATTGGTGAAATTGGGTTAACAGGTGAAATTCGT
CGAGTGACTCGAATTGAACAAAGACTGAATGAAGCTGCAAAACTAGGATTTAAAAAGGTATATGCTCCCAAAAATTCAAT
TGTAGGGATTGATATTCCTGAACAAATTCAAGTGATTGGAGTGACTACTTTGACTGAATGTCTAAAACTAGTCTTCGGTT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(70-218)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

81.236

100

0.812
  radA Streptococcus pneumoniae D39

81.236

100

0.812
  radA Streptococcus pneumoniae R6

81.236

100

0.812
  radA Streptococcus pneumoniae TIGR4

81.236

100

0.812
  radA Streptococcus mitis SK321

81.236

100

0.812
  radA Streptococcus mitis NCTC 12261

81.015

100

0.81
  radA Bacillus subtilis subsp. subtilis str. 168

61.269

100

0.618