Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   QJS82_RS06135 Genome accession   NZ_CP124526
Coordinates   1486398..1487309 (-) Length   303 a.a.
NCBI ID   WP_227670435.1    Uniprot ID   -
Organism   Psychrobacter sp. WB2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1481398..1492309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJS82_RS06105 (QJS82_06105) - 1481455..1482756 (+) 1302 WP_281491583.1 AarF/ABC1/UbiB kinase family protein -
  QJS82_RS06110 (QJS82_06110) - 1482809..1483639 (-) 831 WP_281491584.1 ion transporter -
  QJS82_RS06115 (QJS82_06115) - 1483999..1484748 (+) 750 WP_201565272.1 YebC/PmpR family DNA-binding transcriptional regulator -
  QJS82_RS06120 (QJS82_06120) - 1484879..1485349 (-) 471 WP_281491585.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  QJS82_RS06125 (QJS82_06125) - 1485432..1485752 (+) 321 WP_025651424.1 IS630 transposase-related protein -
  QJS82_RS06130 (QJS82_06130) - 1485766..1486269 (+) 504 WP_281491642.1 IS630 family transposase -
  QJS82_RS06135 (QJS82_06135) pilA 1486398..1487309 (-) 912 WP_227670435.1 signal recognition particle-docking protein FtsY Machinery gene
  QJS82_RS06140 (QJS82_06140) - 1488238..1488390 (+) 153 WP_281491586.1 hypothetical protein -
  QJS82_RS06145 (QJS82_06145) - 1488578..1490086 (+) 1509 WP_281491587.1 pitrilysin family protein -
  QJS82_RS06150 (QJS82_06150) - 1490156..1491688 (+) 1533 WP_281491588.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 303 a.a.        Molecular weight: 32457.37 Da        Isoelectric Point: 5.4602

>NTDB_id=826215 QJS82_RS06135 WP_227670435.1 1486398..1487309(-) (pilA) [Psychrobacter sp. WB2]
MKTGLSKSRKNLAEGMVSILIGGKEIDDELLEEVEDQLLVADIGVNATNRIIKSLTEQTARGDLIYAHSLYKALQTELVD
ILTPKVAPLVIDTSKKPFVILVVGVNGVGKTTTIGKLAKRLQGEGKSVMLAAGDTFRAAATEQLQIWGERNNIPVVAQGH
GSDSASVIFDAMQSAKAKNIDVLIADTAGRLQNKTHLMAELEKVVRVMRKADPSAPHEGMIVLDAGTGQNAINQVELFNK
VVPLTGITITKLDGTAKGGVVFNIAETSDVPIRYIGVGESIDDLRAFSPKQFVAALFETDDKE

Nucleotide


Download         Length: 912 bp        

>NTDB_id=826215 QJS82_RS06135 WP_227670435.1 1486398..1487309(-) (pilA) [Psychrobacter sp. WB2]
ATGAAAACGGGACTGAGTAAGTCACGTAAAAATCTTGCCGAAGGTATGGTCAGTATTCTTATCGGTGGTAAAGAGATTGA
TGATGAGCTATTAGAAGAGGTTGAAGACCAGCTGTTGGTGGCTGATATCGGTGTCAATGCAACCAATCGTATTATCAAAA
GTCTCACTGAGCAAACCGCTCGTGGTGATTTGATTTATGCGCATTCATTGTATAAAGCCTTACAAACTGAGCTGGTCGAT
ATCTTAACGCCAAAAGTTGCGCCATTGGTCATCGATACCAGTAAAAAGCCTTTTGTTATCTTGGTAGTGGGCGTGAATGG
TGTTGGTAAAACGACGACTATTGGTAAGCTTGCTAAGCGTCTGCAAGGTGAAGGTAAATCAGTGATGTTGGCAGCTGGCG
ATACGTTCCGAGCTGCGGCGACTGAACAGCTGCAAATTTGGGGTGAACGCAATAACATTCCTGTCGTCGCCCAAGGTCAT
GGCTCTGACAGCGCCTCTGTTATCTTTGATGCCATGCAATCTGCCAAAGCAAAAAATATCGATGTATTAATCGCTGATAC
CGCAGGGCGCTTGCAAAATAAAACCCACCTGATGGCGGAGCTTGAAAAAGTCGTGCGCGTCATGCGTAAAGCCGATCCAA
GTGCACCGCACGAAGGTATGATTGTCCTCGACGCTGGCACAGGTCAAAATGCGATTAACCAAGTGGAATTGTTTAATAAA
GTCGTGCCATTAACCGGCATTACTATTACTAAATTAGACGGTACTGCAAAAGGGGGTGTGGTGTTCAATATCGCTGAAAC
CTCCGATGTGCCGATTCGTTATATTGGGGTCGGTGAGTCGATTGATGATTTGCGTGCCTTTAGTCCAAAACAGTTTGTCG
CCGCGCTATTTGAGACTGACGATAAAGAGTAG

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(18-78)

SRP54-type protein, GTPase domain (SRP54)

(97-297)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

52.349

98.35

0.515