Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   SE695_RS08420 Genome accession   NZ_CP138419
Coordinates   1723692..1724321 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain 30EVA2     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1718692..1729321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE695_RS08400 ycbZ 1719093..1720853 (-) 1761 WP_000156518.1 AAA family ATPase -
  SE695_RS08405 matP 1721039..1721491 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  SE695_RS08410 ompA 1721567..1722607 (-) 1041 WP_021544773.1 porin OmpA -
  SE695_RS08415 sulA 1722964..1723473 (-) 510 WP_001554869.1 SOS-induced cell division inhibitor SulA -
  SE695_RS08420 sxy/tfoX 1723692..1724321 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  SE695_RS08425 yccS 1724284..1726446 (-) 2163 WP_000875061.1 YccS family putative transporter -
  SE695_RS08430 yccF 1726456..1726902 (-) 447 WP_001261235.1 YccF domain-containing protein -
  SE695_RS08435 helD 1727025..1729079 (+) 2055 WP_001295354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=826205 SE695_RS08420 WP_000839153.1 1723692..1724321(+) (sxy/tfoX) [Escherichia coli strain 30EVA2]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=826205 SE695_RS08420 WP_000839153.1 1723692..1724321(+) (sxy/tfoX) [Escherichia coli strain 30EVA2]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1