Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   SE694_RS21205 Genome accession   NZ_CP138416
Coordinates   4332373..4333050 (+) Length   225 a.a.
NCBI ID   WP_000178161.1    Uniprot ID   -
Organism   Escherichia coli strain 39EVA     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4327373..4338050
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE694_RS21170 gspG 4327853..4328290 (+) 438 WP_001202874.1 type II secretion system major pseudopilin GspG -
  SE694_RS21175 gspH 4328298..4328807 (+) 510 WP_001076046.1 type II secretion system minor pseudopilin GspH -
  SE694_RS21180 gspI 4328804..4329181 (+) 378 WP_001041743.1 type II secretion system minor pseudopilin GspI -
  SE694_RS21185 gspJ 4329174..4329761 (+) 588 WP_000610634.1 type II secretion system minor pseudopilin GspJ -
  SE694_RS21190 gspK 4329754..4330737 (+) 984 WP_113402191.1 type II secretion system minor pseudopilin GspK -
  SE694_RS21195 gspL 4330752..4331915 (+) 1164 WP_001115238.1 type II secretion system protein GspL -
  SE694_RS21200 gspM 4331912..4332373 (+) 462 WP_001295161.1 type II secretion system protein GspM -
  SE694_RS21205 pilD 4332373..4333050 (+) 678 WP_000178161.1 prepilin peptidase GspO Machinery gene
  SE694_RS21210 bfr 4333079..4333555 (-) 477 WP_000675504.1 bacterioferritin -
  SE694_RS21215 bfd 4333627..4333821 (-) 195 WP_000289085.1 bacterioferritin-associated ferredoxin -
  SE694_RS21220 chiA 4333990..4336683 (-) 2694 WP_000773156.1 bifunctional chitinase/lysozyme -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24898.78 Da        Isoelectric Point: 7.9563

>NTDB_id=826166 SE694_RS21205 WP_000178161.1 4332373..4333050(+) (pilD) [Escherichia coli strain 39EVA]
MTMLLPLFILVGFIAGYFVNAIAYHLSPLEDKTALTFRQVLVHFRQKKYAWHDTVPLILCVAAAIACALAPFTPIVTGAL
FLYFCFVLTLSVIDFRTQLLPDKLTLPLLWLGLVFNAQYGLIDLHDAVYGAVAGYGVLWCVYWGVWLVCHKEGLGYGDFK
LLAAAGAWCGWQTLPMILLIASLGGIGYAIVSQLLQRRTITTIAFGPWLALGSMINLGYLAWISY

Nucleotide


Download         Length: 678 bp        

>NTDB_id=826166 SE694_RS21205 WP_000178161.1 4332373..4333050(+) (pilD) [Escherichia coli strain 39EVA]
ATGACAATGCTACTGCCGCTCTTCATTCTGGTTGGTTTTATTGCAGGTTATTTTGTTAATGCCATCGCCTATCACCTCTC
GCCGTTGGAGGATAAAACGGCGTTAACGTTTCGCCAGGTATTGGTTCATTTCAGGCAAAAAAAATATGCCTGGCATGATA
CAGTGCCCCTGATACTTTGTGTTGCTGCTGCTATCGCCTGCGCCCTGGCACCTTTCACGCCCATCGTGACTGGCGCACTC
TTTCTCTATTTCTGTTTCGTACTCACGCTCAGTGTTATTGATTTTCGCACTCAGCTCCTGCCCGACAAACTCACCTTACC
GCTGCTCTGGCTTGGCTTGGTATTTAATGCGCAGTATGGATTAATTGATTTACATGATGCGGTTTACGGCGCGGTAGCGG
GCTATGGGGTGCTGTGGTGTGTTTACTGGGGCGTCTGGTTAGTTTGTCACAAAGAGGGATTGGGCTACGGTGATTTCAAG
CTACTGGCCGCTGCAGGCGCATGGTGTGGCTGGCAAACGTTGCCAATGATACTGCTGATTGCCTCGCTGGGTGGCATTGG
TTACGCCATCGTTTCACAACTTCTGCAACGCCGGACTATAACCACTATCGCATTCGGCCCGTGGCTTGCGCTCGGCAGCA
TGATAAACCTGGGGTATCTGGCCTGGATCTCTTATTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(82-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Neisseria gonorrhoeae MS11

32.946

100

0.378