Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   SE693_RS06780 Genome accession   NZ_CP138412
Coordinates   1457160..1457627 (-) Length   155 a.a.
NCBI ID   WP_319751098.1    Uniprot ID   -
Organism   Escherichia coli strain 50EVA     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1452160..1462627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE693_RS06755 rpsG 1452301..1452771 (+) 471 WP_001138043.1 30S ribosomal protein S7 -
  SE693_RS06760 fusA 1452868..1454982 (+) 2115 WP_000124700.1 elongation factor G -
  SE693_RS06765 tuf 1455053..1456237 (+) 1185 WP_000031783.1 elongation factor Tu -
  SE693_RS06770 bfd 1456420..1456614 (+) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  SE693_RS06775 bfr 1456687..1457163 (+) 477 WP_000675515.1 bacterioferritin -
  SE693_RS06780 pilD 1457160..1457627 (-) 468 WP_319751098.1 A24 family peptidase Machinery gene
  SE693_RS06785 rpsJ 1458006..1458317 (+) 312 WP_001181004.1 30S ribosomal protein S10 -
  SE693_RS06790 rplC 1458350..1458979 (+) 630 WP_000579833.1 50S ribosomal protein L3 -
  SE693_RS06795 rplD 1458990..1459595 (+) 606 WP_000424395.1 50S ribosomal protein L4 -
  SE693_RS06800 rplW 1459592..1459894 (+) 303 WP_000617544.1 50S ribosomal protein L23 -
  SE693_RS06805 rplB 1459912..1460733 (+) 822 WP_000301864.1 50S ribosomal protein L2 -
  SE693_RS06810 rpsS 1460750..1461028 (+) 279 WP_001138117.1 30S ribosomal protein S19 -
  SE693_RS06815 rplV 1461043..1461375 (+) 333 WP_000447529.1 50S ribosomal protein L22 -
  SE693_RS06820 rpsC 1461393..1462094 (+) 702 WP_000529945.1 30S ribosomal protein S3 -
  SE693_RS06825 rplP 1462107..1462517 (+) 411 WP_000941212.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16904.06 Da        Isoelectric Point: 8.1296

>NTDB_id=826043 SE693_RS06780 WP_319751098.1 1457160..1457627(-) (pilD) [Escherichia coli strain 50EVA]
MDATLPFLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTILPRLVFLAASFACGAVVVGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=826043 SE693_RS06780 WP_319751098.1 1457160..1457627(-) (pilD) [Escherichia coli strain 50EVA]
ATGGACGCTACCCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGTCCTACTTTTTTTATGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTCTCAGGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACCTGGACCATCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTGTTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGTTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.8

80.645

0.361
  pilD Neisseria gonorrhoeae MS11

38.095

94.839

0.361