Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   SE702_RS02605 Genome accession   NZ_CP138407
Coordinates   521413..522042 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain 50EVAW     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 516413..527042
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE702_RS02585 ycbZ 516814..518574 (-) 1761 WP_000156518.1 AAA family ATPase -
  SE702_RS02590 matP 518760..519212 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  SE702_RS02595 ompA 519288..520328 (-) 1041 WP_000750416.1 porin OmpA -
  SE702_RS02600 sulA 520685..521194 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  SE702_RS02605 sxy/tfoX 521413..522042 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  SE702_RS02610 yccS 522005..524167 (-) 2163 WP_133301049.1 YccS family putative transporter -
  SE702_RS02615 yccF 524177..524623 (-) 447 WP_001261235.1 YccF domain-containing protein -
  SE702_RS02620 helD 524746..526800 (+) 2055 WP_001295354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=825940 SE702_RS02605 WP_000839153.1 521413..522042(+) (sxy/tfoX) [Escherichia coli strain 50EVAW]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=825940 SE702_RS02605 WP_000839153.1 521413..522042(+) (sxy/tfoX) [Escherichia coli strain 50EVAW]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1