Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   SE699_RS15900 Genome accession   NZ_CP138399
Coordinates   3263045..3263674 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain 64EVA     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3258045..3268674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE699_RS15885 helD 3258287..3260341 (-) 2055 WP_074524244.1 DNA helicase IV -
  SE699_RS15890 yccF 3260464..3260910 (+) 447 WP_001261235.1 YccF domain-containing protein -
  SE699_RS15895 yccS 3260920..3263082 (+) 2163 WP_000875061.1 YccS family putative transporter -
  SE699_RS15900 sxy/tfoX 3263045..3263674 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  SE699_RS15905 sulA 3263893..3264402 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  SE699_RS15910 ompA 3264759..3265799 (+) 1041 WP_000750416.1 porin OmpA -
  SE699_RS15915 matP 3265875..3266327 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  SE699_RS15920 ycbZ 3266513..3268273 (+) 1761 WP_000156518.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=825912 SE699_RS15900 WP_000839153.1 3263045..3263674(-) (sxy/tfoX) [Escherichia coli strain 64EVA]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=825912 SE699_RS15900 WP_000839153.1 3263045..3263674(-) (sxy/tfoX) [Escherichia coli strain 64EVA]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1