Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   SE697_RS22465 Genome accession   NZ_CP138397
Coordinates   4588405..4589082 (+) Length   225 a.a.
NCBI ID   WP_000178161.1    Uniprot ID   -
Organism   Escherichia coli strain 81EVA     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4583405..4594082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE697_RS22430 gspG 4583885..4584322 (+) 438 WP_001202874.1 type II secretion system major pseudopilin GspG -
  SE697_RS22435 gspH 4584330..4584839 (+) 510 WP_135996978.1 type II secretion system minor pseudopilin GspH -
  SE697_RS22440 gspI 4584836..4585213 (+) 378 WP_047670896.1 type II secretion system minor pseudopilin GspI -
  SE697_RS22445 gspJ 4585206..4585793 (+) 588 WP_000610634.1 type II secretion system minor pseudopilin GspJ -
  SE697_RS22450 gspK 4585786..4586769 (+) 984 WP_001058522.1 type II secretion system minor pseudopilin GspK -
  SE697_RS22455 gspL 4586784..4587947 (+) 1164 WP_135996980.1 type II secretion system protein GspL -
  SE697_RS22460 gspM 4587944..4588405 (+) 462 WP_001295161.1 type II secretion system protein GspM -
  SE697_RS22465 pilD 4588405..4589082 (+) 678 WP_000178161.1 prepilin peptidase GspO Machinery gene
  SE697_RS22470 bfr 4589111..4589587 (-) 477 WP_000675504.1 bacterioferritin -
  SE697_RS22475 bfd 4589659..4589853 (-) 195 WP_000289085.1 bacterioferritin-associated ferredoxin -
  SE697_RS22480 chiA 4590022..4592715 (-) 2694 WP_319766636.1 bifunctional chitinase/lysozyme -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24898.78 Da        Isoelectric Point: 7.9563

>NTDB_id=825849 SE697_RS22465 WP_000178161.1 4588405..4589082(+) (pilD) [Escherichia coli strain 81EVA]
MTMLLPLFILVGFIAGYFVNAIAYHLSPLEDKTALTFRQVLVHFRQKKYAWHDTVPLILCVAAAIACALAPFTPIVTGAL
FLYFCFVLTLSVIDFRTQLLPDKLTLPLLWLGLVFNAQYGLIDLHDAVYGAVAGYGVLWCVYWGVWLVCHKEGLGYGDFK
LLAAAGAWCGWQTLPMILLIASLGGIGYAIVSQLLQRRTITTIAFGPWLALGSMINLGYLAWISY

Nucleotide


Download         Length: 678 bp        

>NTDB_id=825849 SE697_RS22465 WP_000178161.1 4588405..4589082(+) (pilD) [Escherichia coli strain 81EVA]
ATGACAATGCTACTGCCGCTCTTCATTCTGGTTGGTTTTATTGCAGGTTATTTTGTTAATGCCATCGCCTATCACCTCTC
GCCGTTGGAGGATAAAACGGCGTTAACGTTTCGCCAGGTATTGGTTCATTTCAGGCAAAAAAAATATGCCTGGCATGATA
CAGTGCCCCTGATACTTTGTGTTGCTGCTGCTATCGCCTGCGCCCTGGCACCTTTCACGCCCATCGTGACTGGCGCACTC
TTTCTCTATTTCTGTTTCGTACTCACGCTCAGTGTTATTGATTTTCGCACTCAGCTCCTGCCCGACAAACTCACCTTACC
GCTGCTCTGGCTTGGCTTGGTATTTAATGCGCAGTATGGATTAATTGATTTACATGATGCGGTTTACGGCGCGGTAGCGG
GCTATGGGGTGCTGTGGTGTGTTTACTGGGGCGTCTGGTTAGTTTGTCACAAAGAGGGATTGGGCTACGGTGATTTCAAG
CTACTGGCCGCTGCAGGCGCATGGTGTGGCTGGCAAACGTTGCCAATGATACTGCTGATTGCCTCGCTGGGTGGCATTGG
TTACGCCATCGTTTCACAACTTCTGCAACGCCGGACTATAACCACTATCGCATTCGGCCCGTGGCTTGCGCTCGGCAGCA
TGATAAACCTGGGGTATCTGGCCTGGATCTCTTATTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(82-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Neisseria gonorrhoeae MS11

32.946

100

0.378