Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QJP78_RS16080 Genome accession   NZ_CP124475
Coordinates   3179665..3180294 (-) Length   209 a.a.
NCBI ID   WP_000839151.1    Uniprot ID   A0A066SWI0
Organism   Escherichia coli strain AVS0969     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3174665..3185294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJP78_RS16065 (QJP78_16065) helD 3174907..3176961 (-) 2055 WP_001295938.1 DNA helicase IV -
  QJP78_RS16070 (QJP78_16070) yccF 3177084..3177530 (+) 447 WP_001261235.1 YccF domain-containing protein -
  QJP78_RS16075 (QJP78_16075) yccS 3177540..3179702 (+) 2163 WP_000875041.1 YccS family putative transporter -
  QJP78_RS16080 (QJP78_16080) sxy/tfoX 3179665..3180294 (-) 630 WP_000839151.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  QJP78_RS16085 (QJP78_16085) sulA 3180513..3181022 (+) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  QJP78_RS16090 (QJP78_16090) ompA 3181378..3182430 (+) 1053 WP_001346420.1 porin OmpA -
  QJP78_RS16095 (QJP78_16095) matP 3182506..3182958 (-) 453 WP_000877153.1 macrodomain Ter protein MatP -
  QJP78_RS16100 (QJP78_16100) ycbZ 3183144..3184904 (+) 1761 WP_000156502.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24163.08 Da        Isoelectric Point: 9.0428

>NTDB_id=825834 QJP78_RS16080 WP_000839151.1 3179665..3180294(-) (sxy/tfoX) [Escherichia coli strain AVS0969]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
CLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=825834 QJP78_RS16080 WP_000839151.1 3179665..3180294(-) (sxy/tfoX) [Escherichia coli strain AVS0969]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGAGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
TGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCAGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A066SWI0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995