Detailed information NTG0082582

Bioinformatically predicted

Overview

• Name: recD/recD2/recDB
• Type: Machinery gene
• Locus tag: R8635_RS09200
• Genome accession: NZ_AP026924
• Coordinates: 1782944..1785310 (+)
• Length: 788 a.a.
• NCBI ID: WP_050201123.1
• Uniprot ID: -
• Organism: Streptococcus pneumoniae strain PZ900700063
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1777944..1790310

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R8635_RS09180 (PC0062_18270)	-	1780383..1780931 (-)	549	WP_000622944.1	CvpA family protein	-
R8635_RS09185 (PC0062_18280)	zapA	1780928..1781230 (-)	303	WP_000002019.1	cell division protein ZapA	-
R8635_RS09190 (PC0062_18290)	rnhC	1781317..1782198 (+)	882	WP_000146855.1	ribonuclease HIII	-
R8635_RS09195 (PC0062_18300)	lepB	1782202..1782816 (+)	615	WP_001083986.1	signal peptidase I	-
R8635_RS09200 (PC0062_18310)	recD/recD2/recDB	1782944..1785310 (+)	2367	WP_050201123.1	ATP-dependent RecD-like DNA helicase	Machinery gene
R8635_RS09205 (PC0062_18320)	tig	1785358..1786641 (-)	1284	WP_044811780.1	trigger factor	-
R8635_RS09210 (PC0062_18330)	-	1786802..1787140 (-)	339	WP_001812733.1	tyrosine-type recombinase/integrase	-
R8635_RS09215 (PC0062_18340)	cbpG	1787496..1788086 (-)	591	Protein_1832	choline-binding protein CbpG	-
R8635_RS09220 (PC0062_18350)	-	1788167..1788406 (-)	240	WP_000754501.1	hypothetical protein	-
R8635_RS09225	-	1788556..1789324 (-)	769	Protein_1834	DNA alkylation repair protein	-
R8635_RS09235 (PC0062_18380)	vraR	1789325..1789957 (-)	633	WP_000698434.1	response regulator transcription factor	Regulator

Sequence

Protein

• Length: 788 a.a.
• Molecular weight: 88536.35 Da
• Isoelectric Point: 4.5885

>NTDB_id=82582 R8635_RS09200 WP_050201123.1 1782944..1785310(+) (recD/recD2/recDB) [Streptococcus pneumoniae strain PZ900700063]
MEVYFSGTIERIIFENPSNFYRILLLEIDDTDAEDFDDFEIIVTGTMADVIEGEDYTFWGQIVQHSKYGEQLQISRYDRA
KPTSKGLVKYFSSSHFKGIGLKTAQKIVDTYGENTIDEILQHPEKLEGIAGLSAKNREAFVSTLRLNYGTEMILAKLANY
GIPNKLAFQIQDFYKEETLDVVENYPYQLVEDIKGLGFTIADQLAEELGIESQAPERFRAGLVHSLFQACMETGDTYVEA
RDLLEQTLTLLESSRPVELDPSQVAQELSYLIEEDKVQQIDTKIFDNSLFFAEEGIRSHLVRILEKGKQKSHDLETIQKH
ITTIEEELGIEYDNIQKQAICDAIQNKVFILTGGPGTGKTTVINGIIAVYALLEGLDLRKKSNLPILLAAPTGRAARRMN
ELTGLPSATIHRHLGMTGDDDTSHLEDYLDTDFIIVDEFSMVDTWLANQLFSNISSNSKILIVGDSDQLPSVSPGQVLAD
LLHIPLIPQTRLEKIYRQSEESTIVTLASQIRQGILPADFTQKKADRSYFEIASGHIPATIEKILGAALRNGIPARDIQV
LAPMYRGTAGIDAINQLMQDLLNPPQKDQLSFEAPQCHYRKGDKVIHLVNDTEINVFNGDLGAITDLIPGKYTESKQDEI
VIDFDGNEVSYPRNEWYKIRLAYAMSIHKSQGSEFPVVILPITSASRRMLERNLIYTAITRAKSKLILLGELQAFDHATQ
HIGTARKTYLVERFSDLLKNVEEKQQAVSETVTSSASEQSYILTEENWDRIPAMIGITDTDLKEIFGK

Nucleotide

• Length: 2367 bp

>NTDB_id=82582 R8635_RS09200 WP_050201123.1 1782944..1785310(+) (recD/recD2/recDB) [Streptococcus pneumoniae strain PZ900700063]
ATGGAAGTTTATTTTTCAGGAACTATTGAACGGATTATTTTTGAAAATCCCAGCAATTTTTATCGCATCCTCCTCCTAGA
AATCGACGATACGGACGCAGAGGATTTTGATGATTTTGAAATCATTGTCACAGGAACCATGGCTGATGTAATTGAGGGCG
AAGACTATACTTTTTGGGGGCAAATTGTCCAGCACTCCAAGTATGGAGAACAACTGCAAATCAGTCGTTATGATCGCGCA
AAACCAACTAGTAAGGGCTTGGTCAAGTACTTTTCAAGTAGCCATTTCAAGGGGATTGGTCTCAAGACAGCTCAGAAAAT
CGTGGATACCTATGGCGAAAATACCATTGACGAAATTTTGCAACACCCAGAAAAGTTAGAAGGCATCGCAGGACTCTCTG
CCAAAAATCGCGAGGCTTTCGTCTCCACTCTCCGTCTCAACTACGGAACGGAGATGATTTTGGCCAAACTAGCCAACTAC
GGCATTCCCAACAAACTAGCCTTTCAGATTCAAGACTTTTACAAGGAAGAAACCCTTGATGTGGTTGAAAATTATCCCTA
CCAGCTGGTTGAGGATATCAAGGGTTTGGGCTTTACCATTGCTGACCAACTAGCTGAGGAACTAGGCATCGAAAGTCAGG
CTCCTGAACGCTTCCGCGCCGGTCTAGTTCACAGTCTTTTTCAGGCCTGTATGGAAACAGGGGACACCTATGTTGAAGCA
CGGGATTTGCTGGAACAAACCCTTACTCTCCTTGAGTCTTCCCGTCCCGTGGAACTAGACCCCAGCCAAGTTGCCCAAGA
GCTCTCCTACCTGATCGAAGAAGACAAGGTTCAGCAGATTGATACCAAGATCTTTGACAACAGCCTCTTTTTCGCTGAGG
AAGGCATCCGCAGTCACTTGGTTCGTATCCTTGAAAAAGGAAAACAGAAGAGTCATGATTTAGAAACCATTCAAAAACAT
ATCACTACTATCGAGGAAGAGCTGGGAATTGAGTATGATAACATTCAAAAACAGGCTATCTGTGATGCTATCCAGAATAA
GGTCTTTATCCTGACAGGTGGACCTGGTACTGGTAAGACAACTGTTATCAATGGGATCATCGCTGTTTACGCCCTGTTAG
AGGGACTTGACCTCAGGAAGAAAAGCAACCTGCCCATTCTTCTTGCTGCTCCAACTGGACGAGCCGCTCGTCGCATGAAT
GAATTGACAGGCTTGCCTAGCGCGACCATACACCGCCACTTGGGAATGACAGGTGACGATGATACCAGTCATCTGGAAGA
TTACCTAGATACTGACTTTATCATCGTGGATGAATTCTCTATGGTGGATACTTGGCTGGCCAATCAACTCTTCTCCAATA
TCTCTTCTAACAGTAAGATCCTCATCGTAGGTGACAGTGATCAGCTACCTTCTGTCAGTCCTGGACAGGTTCTAGCGGAT
CTGCTTCATATTCCTTTGATTCCTCAGACTCGCTTGGAAAAAATTTATCGACAAAGCGAAGAATCAACCATCGTCACCCT
AGCTAGTCAGATTCGACAGGGCATCTTGCCAGCTGATTTCACCCAAAAAAAAGCTGACCGTTCCTACTTTGAAATTGCTA
GTGGCCATATTCCTGCCACCATTGAAAAAATCTTAGGTGCCGCCCTCAGAAATGGTATTCCTGCCCGTGATATCCAAGTT
CTGGCTCCTATGTACCGAGGGACGGCAGGGATTGATGCTATCAATCAGCTCATGCAAGACCTGCTCAATCCCCCACAAAA
AGATCAACTCAGTTTTGAAGCTCCTCAGTGCCACTATCGTAAGGGAGACAAGGTCATTCATTTGGTTAACGATACTGAAA
TCAATGTCTTTAATGGGGATTTAGGAGCTATCACAGACCTGATTCCTGGTAAATACACCGAATCGAAACAAGACGAGATT
GTCATTGATTTTGATGGTAATGAAGTCTCTTACCCCCGTAACGAATGGTACAAGATTCGCTTGGCCTATGCCATGAGTAT
TCATAAGTCTCAGGGAAGTGAGTTCCCAGTTGTCATCCTACCGATTACTAGTGCTAGCCGACGTATGCTGGAGCGAAATC
TCATCTACACAGCCATTACACGTGCCAAAAGCAAACTCATCTTACTAGGCGAATTACAAGCCTTCGACCATGCTACCCAA
CACATCGGAACTGCCCGAAAAACCTATCTGGTTGAACGCTTCAGTGATCTACTGAAGAATGTTGAAGAAAAGCAACAAGC
TGTCTCTGAAACAGTCACATCAAGTGCCTCTGAACAATCCTACATCCTAACCGAAGAAAACTGGGACCGCATCCCAGCCA
TGATTGGGATTACAGACACAGACCTCAAAGAGATTTTTGGAAAATAG

Domains

Predicted by InterProScan.

• Helix-hairpin-helix containing domain (HHH_RecD2) (148-237)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (662-709)

• AAA domain (AAA_30) (332-520)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (574-644)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD/recD2/recDB	Bacillus subtilis subsp. subtilis str. 168	41.845	94.924	0.397