Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   SE697_RS10435 Genome accession   NZ_CP138397
Coordinates   2124234..2124863 (+) Length   209 a.a.
NCBI ID   WP_319767405.1    Uniprot ID   -
Organism   Escherichia coli strain 81EVA     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2119234..2129863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE697_RS10415 ycbZ 2119635..2121395 (-) 1761 WP_000156518.1 AAA family ATPase -
  SE697_RS10420 matP 2121581..2122033 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  SE697_RS10425 ompA 2122109..2123149 (-) 1041 WP_000750416.1 porin OmpA -
  SE697_RS10430 sulA 2123506..2124015 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  SE697_RS10435 sxy/tfoX 2124234..2124863 (+) 630 WP_319767405.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  SE697_RS10440 yccS 2124826..2126988 (-) 2163 WP_000875061.1 YccS family putative transporter -
  SE697_RS10445 yccF 2126998..2127444 (-) 447 WP_001261235.1 YccF domain-containing protein -
  SE697_RS10450 helD 2127567..2129621 (+) 2055 WP_001338439.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24131.02 Da        Isoelectric Point: 9.2433

>NTDB_id=825815 SE697_RS10435 WP_319767405.1 2124234..2124863(+) (sxy/tfoX) [Escherichia coli strain 81EVA]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQFCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=825815 SE697_RS10435 WP_319767405.1 2124234..2124863(+) (sxy/tfoX) [Escherichia coli strain 81EVA]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTTCTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995