Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   R8635_RS08435 Genome accession   NZ_AP026924
Coordinates   1636686..1636952 (-) Length   88 a.a.
NCBI ID   WP_001814186.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700063     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1631686..1641952
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8635_RS08425 (PC0062_16740) metF 1633246..1634112 (-) 867 WP_268217878.1 methylenetetrahydrofolate reductase [NAD(P)H] -
  R8635_RS08430 (PC0062_16750) metE 1634176..1636425 (-) 2250 WP_268217879.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  R8635_RS08435 (PC0062_16760) HI0659 1636686..1636952 (-) 267 WP_001814186.1 helix-turn-helix domain-containing protein Machinery gene
  R8635_RS08440 (PC0062_16770) - 1637036..1637524 (-) 489 Protein_1678 transposase -
  R8635_RS08445 (PC0062_16780) - 1637680..1638681 (+) 1002 WP_000597971.1 endonuclease/exonuclease/phosphatase family protein -
  R8635_RS08450 (PC0062_16790) pheT 1638749..1641151 (-) 2403 WP_000909142.1 phenylalanine--tRNA ligase subunit beta -
  R8635_RS08455 (PC0062_16800) - 1641228..1641737 (-) 510 WP_000619941.1 N-acetyltransferase -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9641.11 Da        Isoelectric Point: 4.2720

>NTDB_id=82574 R8635_RS08435 WP_001814186.1 1636686..1636952(-) (HI0659) [Streptococcus pneumoniae strain PZ900700063]
MEGCPSELFSKEEILESDMRVAIMSELIEARYEQGISQKKLEEVSGISQPVIARMETGESSLQLDTVLKVLTSLGKTLAV
VPLEQGKS

Nucleotide


Download         Length: 267 bp        

>NTDB_id=82574 R8635_RS08435 WP_001814186.1 1636686..1636952(-) (HI0659) [Streptococcus pneumoniae strain PZ900700063]
TTGGAAGGATGTCCATCTGAGCTCTTTAGCAAGGAGGAAATCCTTGAAAGTGATATGCGAGTGGCTATCATGAGCGAGTT
GATTGAGGCTAGGTATGAACAAGGAATCAGTCAGAAAAAGCTGGAAGAAGTCAGTGGAATAAGCCAGCCTGTCATAGCTA
GGATGGAGACAGGAGAGAGCAGTCTTCAGTTGGATACGGTCTTAAAAGTTCTAACCAGTCTAGGAAAGACACTAGCAGTC
GTTCCACTTGAACAGGGGAAAAGTTGA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(29-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

55.844

87.5

0.489

Multiple sequence alignment