Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   SE696_RS11350 Genome accession   NZ_CP138393
Coordinates   2327733..2328716 (-) Length   327 a.a.
NCBI ID   WP_319776485.1    Uniprot ID   -
Organism   Escherichia coli strain 101EVA     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2322733..2333716
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE696_RS11325 - 2323882..2323989 (-) 108 WP_001295224.1 type I toxin-antitoxin system toxin Ldr family protein -
  SE696_RS11330 - 2324365..2324472 (-) 108 WP_001295224.1 type I toxin-antitoxin system toxin Ldr family protein -
  SE696_RS11335 - 2324848..2324955 (-) 108 WP_001295224.1 type I toxin-antitoxin system toxin Ldr family protein -
  SE696_RS11340 yhjV 2325431..2326702 (+) 1272 WP_001296805.1 aromatic amino acid transport family protein -
  SE696_RS11345 dppF 2326732..2327736 (-) 1005 WP_000107018.1 dipeptide ABC transporter ATP-binding subunit DppF -
  SE696_RS11350 amiE 2327733..2328716 (-) 984 WP_319776485.1 dipeptide ABC transporter ATP-binding protein Regulator
  SE696_RS11355 dppC 2328727..2329629 (-) 903 WP_000084677.1 dipeptide ABC transporter permease DppC -
  SE696_RS11360 dppB 2329639..2330658 (-) 1020 WP_000938855.1 dipeptide ABC transporter permease DppB -
  SE696_RS11365 dppA 2330966..2332573 (-) 1608 WP_001222883.1 dipeptide ABC transporter substrate-binding protein DppA -

Sequence

Protein


Download         Length: 327 a.a.        Molecular weight: 35845.35 Da        Isoelectric Point: 6.4093

>NTDB_id=825735 SE696_RS11350 WP_319776485.1 2327733..2328716(-) (amiE) [Escherichia coli strain 101EVA]
MALLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGEDLQRISE
KERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKSTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQ
RVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGDAHA
IFHAPRHPYTQALLRALPEFAQDKERLASLPGVVPGKYDRPNGCLLNPRCPYATDRCRAEEPALNMLADGRQSKCHYPLD
DAGRPTL

Nucleotide


Download         Length: 984 bp        

>NTDB_id=825735 SE696_RS11350 WP_319776485.1 2327733..2328716(-) (amiE) [Escherichia coli strain 101EVA]
ATGGCGTTATTAAATGTAGATAAATTATCGGTGCATTTCGGCGACGAAAGCGCGCCGTTCCGCGCCGTAGACCGCATCAG
CTACAGCGTAAAACAGGGCGAAGTGGTCGGGATTGTGGGTGAGTCCGGCTCCGGTAAGTCGGTCAGTTCACTGGCGATTA
TGGGGCTGATTGATTATCCGGGCCGCGTAATGGCAGAAAAACTGGAGTTTAACGGCGAGGATTTGCAGCGTATCTCAGAA
AAAGAGCGCCGCAACCTGGTGGGTGCCGAAGTGGCGATGATCTTCCAGGACCCGATGACCAGCCTTAACCCGTGCTACAC
CGTGGGTTTCCAGATTATGGAAGCGATTAAGGTGCATCAGGGCGGCAACAAAAGTACCCGCCGTCAGCGAGCGATTGACC
TGCTGAATCAGGTCGGTATTCCCGATCCGGCATCGCGTCTGGATGTTTACCCGCATCAGCTTTCCGGCGGCATGAGCCAG
CGCGTGATGATCGCCATGGCGATTGCCTGTCGGCCAAAACTGCTGATTGCCGATGAACCAACCACTGCGCTGGACGTGAC
CATTCAGGCGCAAATCATCGAACTACTGCTGGAGCTACAGCAGAAAGAGAACATGGCGCTGGTGTTAATTACCCATGACC
TGGCGCTGGTGGCGGAAGCGGCACATAAAATCATCGTGATGTATGCAGGCCAGGTGGTGGAAACCGGTGATGCGCACGCC
ATCTTCCATGCGCCGCGTCACCCGTATACTCAGGCATTGCTGCGTGCGCTGCCAGAATTTGCTCAGGACAAAGAACGTCT
GGCGTCGTTGCCAGGTGTCGTTCCCGGCAAGTACGACCGCCCGAACGGCTGCCTGCTTAACCCGCGCTGCCCCTATGCCA
CTGACAGATGTCGCGCTGAAGAACCGGCGCTGAATATGCTCGCTGACGGGCGTCAGTCCAAATGCCATTACCCACTTGAT
GATGCCGGGAGGCCGACACTATGA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-297)

ABC transporter (ABC_tran)

(24-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

42.991

98.165

0.422
  amiE Streptococcus thermophilus LMG 18311

42.991

98.165

0.422
  amiE Streptococcus thermophilus LMD-9

42.991

98.165

0.422
  oppD Streptococcus mutans UA159

41.379

97.554

0.404