Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   SE861_RS01670 Genome accession   NZ_CP138371
Coordinates   289031..289765 (+) Length   244 a.a.
NCBI ID   WP_000589158.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain R31-snf2     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 284031..294765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE861_RS01655 (SE861_01655) - 284953..286383 (+) 1431 WP_001217286.1 helix-turn-helix domain-containing protein -
  SE861_RS01660 (SE861_01660) recP/tkt 286508..288493 (+) 1986 WP_000141871.1 transketolase Machinery gene
  SE861_RS01665 (SE861_01665) - 288706..289011 (+) 306 WP_000711205.1 bacteriocin immunity protein -
  SE861_RS01670 (SE861_01670) pptA 289031..289765 (+) 735 WP_000589158.1 ABC transporter ATP-binding protein Regulator
  SE861_RS01675 (SE861_01675) - 289769..291373 (+) 1605 WP_001104589.1 hypothetical protein -
  SE861_RS01680 (SE861_01680) - 291581..292966 (-) 1386 WP_319099083.1 PTS transporter subunit EIIC -
  SE861_RS01685 (SE861_01685) proB 293107..293910 (+) 804 WP_000820352.1 glutamate 5-kinase -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 27546.69 Da        Isoelectric Point: 4.6741

>NTDB_id=825610 SE861_RS01670 WP_000589158.1 289031..289765(+) (pptA) [Streptococcus agalactiae strain R31-snf2]
MIKFEHVSKVYGEKEALSDLTLSIKDGEIFGLIGHNGAGKTTTISILTSIIDATYGQVYIDDLLLTEHRDQIKKKIGYVP
DSPDIFLNLTAEEYWYFLAKIYDVAPEDIEARITKLVDIFELEEQRYNPIESFSHGMRQKVIVIGALLPNPDIWILDEPL
TGLDPQASFDLKEMMKEHAKNGKTVIFSTHVLAVAEQLCDRIGILKQGKLIFVGSLGELKMQYPDKDLETIYLELAGRQA
NREG

Nucleotide


Download         Length: 735 bp        

>NTDB_id=825610 SE861_RS01670 WP_000589158.1 289031..289765(+) (pptA) [Streptococcus agalactiae strain R31-snf2]
ATGATTAAGTTTGAACATGTTTCGAAAGTATACGGGGAAAAAGAAGCTCTCAGTGATTTAACCCTCTCTATTAAAGATGG
TGAGATTTTTGGATTAATAGGTCACAATGGAGCAGGAAAAACAACGACAATTAGTATTCTAACATCTATTATTGATGCAA
CTTATGGCCAAGTCTATATTGATGACCTACTTTTGACAGAACATCGTGACCAAATTAAGAAAAAAATAGGTTATGTACCG
GACTCGCCAGATATTTTCTTAAATTTAACCGCAGAGGAATACTGGTACTTTTTAGCTAAAATTTATGACGTTGCCCCAGA
AGATATTGAAGCACGTATCACAAAATTGGTAGACATATTTGAACTAGAGGAGCAACGCTATAATCCTATTGAAAGTTTTT
CACATGGTATGCGTCAAAAAGTCATTGTTATAGGTGCCCTTCTTCCAAATCCTGACATTTGGATTCTAGATGAGCCGTTA
ACTGGTTTAGACCCTCAAGCTTCTTTTGATTTGAAAGAAATGATGAAAGAACATGCTAAAAATGGAAAAACAGTTATTTT
TTCAACACATGTTTTAGCAGTTGCAGAACAGTTATGCGACAGAATAGGTATTTTGAAACAAGGGAAATTAATCTTTGTCG
GTAGCTTAGGTGAGTTAAAAATGCAATATCCAGATAAAGATTTGGAAACTATCTATTTGGAATTAGCAGGACGTCAAGCT
AATAGGGAGGGATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus thermophilus LMD-9

38.655

97.541

0.377
  pptA Streptococcus salivarius strain HSISS4

38.235

97.541

0.373