Detailed information NTG0825552

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: SE933_RS06825
• Genome accession: NZ_CP138370
• Coordinates: 1288016..1290124 (-)
• Length: 702 a.a.
• NCBI ID: WP_000002804.1
• Uniprot ID: -
• Organism: Streptococcus agalactiae strain SagR40
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 1283016..1295124

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SE933_RS06800 (SE933_06800)	-	1283435..1284064 (-)	630	WP_000140673.1	TetR/AcrR family transcriptional regulator	-
SE933_RS06805 (SE933_06805)	-	1284336..1284659 (+)	324	WP_001867206.1	HXXEE domain-containing protein	-
SE933_RS06810 (SE933_06810)	-	1284817..1285467 (+)	651	WP_000120090.1	HXXEE domain-containing protein	-
SE933_RS06815 (SE933_06815)	-	1285597..1286973 (+)	1377	WP_000427477.1	amino acid permease	-
SE933_RS06820 (SE933_06820)	mmuM	1286978..1287922 (+)	945	WP_000532326.1	homocysteine S-methyltransferase	-
SE933_RS06825 (SE933_06825)	clpC	1288016..1290124 (-)	2109	WP_000002804.1	AAA family ATPase	Regulator
SE933_RS06830 (SE933_06830)	rplJ	1290558..1291058 (+)	501	WP_001287285.1	50S ribosomal protein L10	-
SE933_RS06835 (SE933_06835)	rplL	1291122..1291487 (+)	366	WP_001196976.1	50S ribosomal protein L7/L12	-

Sequence

Protein

• Length: 702 a.a.
• Molecular weight: 77675.45 Da
• Isoelectric Point: 4.8408

>NTDB_id=825552 SE933_RS06825 WP_000002804.1 1288016..1290124(-) (clpC) [Streptococcus agalactiae strain SagR40]
MANNNFYNRDPFGNMDDIFNSLMGNMGGYNSENKRYLINGREVTPEEFSQYRQTGKLPGQELNNQNTPTNQVSADSVLTK
LGTNLTDQARQHLLDPVIGRNKEIQETAEILARRTKNNPVLVGDAGVGKTAVIEGLAQAIINGDVPAAIKNKEIISIDIS
SLEAGTQYRGSFEENIQNIIKEVKETGNIILFFDEIHQILGAGSTGGDSGSKGLADILKPALSRGELTVIGATTQDEYRN
TILKNAALARRFNEVKVNAPSAQDTFNILMGIRNLYEQHHNVVLPDSVLKAAVDLSIQYIPQRSLPDKAIDLIDMTAAHL
AAQHPVTDLKSLEKEIAAQRDKQEKAVNTEDFEEALKVKTRIEELQNQIDNHTEGQKVTATINDIAMSIERLTGVPVSNM
GASDIERLKELGNRLKGKVIGQNDAVEAVARAIRRNRAGFDDGNRPIGSFLFVGPTGVGKTELAKQLAFDMFGSKDAIVR
LDMSEYNDRTAVSKLIGATAGYVGYDDNSNTLTERIRRNPYSIVLLDEIEKADPQVITLLLQVLDDGRLTDGQGNTINFK
NTVIIATSNAGFGNEAFTGDSDKDLKIMERISPYFRPEFLNRFNGVIEFSHLSKDDLNEIVDLMLDEVNQTIGKKGIDLV
VDENVKSHLIDLGYDEAMGVRPLRRVIEQEIRDRITDYYLDHTDVKHLKANLQDGQIVISER

Nucleotide

• Length: 2109 bp

>NTDB_id=825552 SE933_RS06825 WP_000002804.1 1288016..1290124(-) (clpC) [Streptococcus agalactiae strain SagR40]
ATGGCAAATAATAATTTTTATAATCGTGACCCTTTTGGAAATATGGATGATATTTTTAATTCTCTAATGGGAAATATGGG
GGGCTATAATAGTGAGAATAAACGATACTTAATCAATGGACGGGAAGTTACTCCTGAAGAATTCAGTCAATATCGTCAAA
CTGGAAAACTCCCCGGTCAAGAGCTAAATAACCAAAATACTCCTACAAACCAAGTCTCTGCAGATAGTGTTTTGACTAAA
TTAGGAACTAATTTAACCGATCAAGCACGTCAGCATTTGCTAGATCCAGTTATTGGACGAAACAAAGAAATTCAGGAAAC
TGCAGAAATTCTAGCTCGTCGTACTAAAAATAATCCTGTTCTAGTTGGTGATGCAGGTGTTGGTAAAACAGCTGTTATTG
AAGGTTTGGCACAAGCAATTATAAATGGTGATGTCCCTGCTGCTATCAAAAATAAAGAAATCATTTCGATAGATATCTCT
AGCCTTGAAGCTGGCACCCAATATAGGGGTAGTTTTGAAGAAAATATTCAAAATATCATAAAAGAAGTTAAGGAAACAGG
AAATATTATTCTCTTCTTTGATGAAATACACCAAATATTAGGAGCCGGTTCAACTGGTGGTGATAGTGGCTCTAAGGGGC
TCGCAGATATACTTAAGCCTGCACTTTCACGTGGTGAATTAACGGTTATAGGTGCAACTACTCAAGATGAATATCGTAAC
ACCATTCTCAAGAATGCTGCCTTAGCACGCCGCTTTAACGAAGTTAAAGTCAATGCACCTTCTGCACAAGATACTTTCAA
TATCCTTATGGGGATAAGAAACCTCTATGAGCAACATCATAATGTTGTTTTACCTGACTCTGTTTTGAAAGCAGCTGTAG
ATTTATCTATTCAATACATACCACAAAGAAGTCTCCCTGATAAAGCAATTGACCTTATTGATATGACTGCTGCACACCTA
GCTGCGCAACATCCCGTAACTGACCTTAAATCCTTAGAAAAAGAAATCGCTGCGCAAAGAGACAAGCAAGAAAAAGCTGT
CAATACTGAAGATTTTGAAGAAGCTCTTAAGGTCAAGACACGCATTGAAGAGTTACAAAACCAGATTGATAATCATACCG
AAGGACAAAAAGTCACTGCAACTATCAATGATATCGCTATGTCAATTGAGCGTCTAACTGGAGTTCCTGTATCAAATATG
GGTGCTAGTGATATTGAACGCTTAAAAGAACTTGGCAATCGTCTAAAAGGTAAAGTCATTGGTCAAAATGATGCTGTTGA
GGCAGTTGCAAGAGCTATTCGCCGAAATCGTGCTGGTTTCGATGATGGTAATCGTCCGATTGGTAGCTTTCTATTTGTTG
GACCAACTGGAGTTGGTAAAACTGAGCTAGCAAAGCAATTAGCTTTTGATATGTTCGGATCAAAGGATGCTATCGTTAGA
CTTGATATGTCTGAATATAATGATCGTACTGCAGTTTCTAAGCTAATTGGAGCGACTGCTGGTTACGTTGGTTATGACGA
CAATAGTAATACACTAACAGAACGTATCCGTCGAAATCCTTATTCTATTGTTCTTCTTGATGAAATCGAAAAAGCTGACC
CGCAAGTTATCACGCTTCTCCTTCAAGTTCTAGATGATGGTCGTTTAACTGATGGTCAAGGAAACACTATTAACTTTAAA
AATACTGTTATCATTGCAACCTCAAATGCAGGTTTTGGAAACGAAGCATTTACAGGTGACAGCGATAAAGACTTGAAAAT
TATGGAACGAATTTCTCCATATTTCCGTCCAGAATTTCTAAATCGTTTCAATGGTGTTATTGAATTCTCTCACCTAAGCA
AAGATGACTTAAACGAAATTGTAGATTTGATGCTTGATGAAGTTAACCAAACAATTGGCAAAAAAGGAATTGACCTTGTG
GTAGATGAAAATGTTAAATCACACTTAATTGACCTGGGTTATGACGAAGCAATGGGAGTACGTCCATTGCGCCGTGTCAT
CGAGCAAGAAATTCGAGATCGCATCACAGACTACTATCTCGATCATACAGATGTTAAACACCTAAAAGCTAATTTGCAAG
ATGGCCAAATCGTCATTTCTGAAAGATAA

Domains

Predicted by InterProScan.

• AAA lid domain (AAA_lid_9) (261-358)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (612-683)

• ATPase family associated with various cellular activities (AAA) (AAA) (120-252)

• AAA domain (Cdc48 subfamily) (AAA_2) (445-604)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Lactococcus lactis subsp. cremoris KW2	47.489	99.288	0.472
clpE	Streptococcus pneumoniae TIGR4	48.983	91.026	0.446
clpE	Streptococcus pneumoniae Rx1	48.983	91.026	0.446
clpE	Streptococcus pneumoniae D39	48.983	91.026	0.446
clpE	Streptococcus pneumoniae R6	48.983	91.026	0.446
clpE	Streptococcus mutans UA159	49.367	90.028	0.444
clpC	Bacillus subtilis subsp. subtilis str. 168	44.03	95.442	0.42
clpC	Streptococcus pneumoniae Rx1	42.994	89.459	0.385
clpC	Streptococcus pneumoniae D39	42.994	89.459	0.385
clpC	Streptococcus pneumoniae TIGR4	42.994	89.459	0.385
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	41.706	90.171	0.376
clpC	Streptococcus thermophilus LMD-9	42.857	86.752	0.372
clpC	Streptococcus thermophilus LMG 18311	42.693	86.752	0.37
clpC	Streptococcus mutans UA159	40.566	90.598	0.368