Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   SE933_RS02395 Genome accession   NZ_CP138370
Coordinates   433960..434721 (-) Length   253 a.a.
NCBI ID   WP_001266270.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain SagR40     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 428960..439721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE933_RS02375 (SE933_02375) purC 430868..431575 (-) 708 WP_000184493.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  SE933_RS02380 (SE933_02380) - 431699..431938 (-) 240 WP_000085642.1 acyl carrier protein -
  SE933_RS02385 (SE933_02385) plsX 431949..432941 (-) 993 WP_000717412.1 phosphate acyltransferase PlsX -
  SE933_RS02390 (SE933_02390) - 433019..433897 (-) 879 WP_000420125.1 CPBP family intramembrane glutamic endopeptidase -
  SE933_RS02395 (SE933_02395) recO 433960..434721 (-) 762 WP_001266270.1 DNA repair protein RecO Machinery gene
  SE933_RS02400 (SE933_02400) - 434711..435886 (-) 1176 WP_000171458.1 pyridoxal phosphate-dependent aminotransferase -
  SE933_RS02405 (SE933_02405) - 435994..436962 (-) 969 WP_000122450.1 ribose-phosphate diphosphokinase -
  SE933_RS02410 (SE933_02410) pcsB 437086..438387 (-) 1302 WP_000746069.1 peptidoglycan hydrolase PcsB -

Sequence

Protein


Download         Length: 253 a.a.        Molecular weight: 29656.09 Da        Isoelectric Point: 6.4093

>NTDB_id=825516 SE933_RS02395 WP_001266270.1 433960..434721(-) (recO) [Streptococcus agalactiae strain SagR40]
MRVSQTYGLVLYNRNYREDDKLVKIFTETEGKRMFFVKHASKSKFNAVLQPLTIAHFILKINDNGLSYIDDYKEVLAFQE
INSDLFKLSYASYITSLADVAISDNVADAQLFIFLKKTLELIEDGLDYEILTNIFEVQLLERFGVALNFHDCVFCHRAGL
PFDFSHKYSGLLCPNHYYKDERRNHLEPNMLHLINRFQSIQFDDLQTISVKPEMKLKIRQFLDMIYDEYVGIHLKSKKFI
DDLSSWGSIMKSD

Nucleotide


Download         Length: 762 bp        

>NTDB_id=825516 SE933_RS02395 WP_001266270.1 433960..434721(-) (recO) [Streptococcus agalactiae strain SagR40]
ATGAGGGTTAGTCAAACATACGGTCTCGTTTTGTATAATCGTAATTATCGTGAAGATGATAAATTAGTTAAAATCTTTAC
GGAGACTGAGGGAAAAAGGATGTTTTTTGTAAAGCATGCTTCAAAGTCAAAATTCAATGCTGTGCTCCAACCTTTGACTA
TTGCTCATTTTATTTTAAAAATTAATGATAATGGTCTTTCTTATATTGATGATTATAAAGAAGTTTTAGCATTTCAAGAA
ATTAATTCAGACTTGTTTAAGTTGTCATATGCGAGTTATATTACTTCTTTGGCTGATGTGGCTATTAGTGATAATGTAGC
GGATGCTCAATTATTTATTTTCCTAAAGAAAACGTTAGAATTGATTGAGGACGGTTTAGATTATGAGATTCTAACGAATA
TTTTTGAAGTACAACTACTAGAGAGGTTCGGTGTTGCTTTAAATTTTCATGATTGTGTTTTTTGTCATAGGGCAGGATTA
CCTTTTGATTTTTCACACAAATATTCTGGATTATTATGTCCAAACCATTATTATAAAGACGAGAGAAGAAACCACCTAGA
ACCTAATATGCTGCACTTAATCAATCGTTTTCAGTCAATTCAATTTGATGATTTACAAACAATTTCTGTGAAACCTGAGA
TGAAACTTAAAATTCGTCAATTTTTGGACATGATTTACGATGAATATGTAGGGATTCATCTTAAAAGTAAAAAATTTATT
GATGATTTGTCTAGTTGGGGAAGTATTATGAAATCAGATTAA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-73)

Recombination protein O C terminal (RecO_C)

(83-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

64.228

97.233

0.625