Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptA   Type   Regulator
Locus tag   SE858_RS05825 Genome accession   NZ_CP138368
Coordinates   1133731..1134465 (+) Length   244 a.a.
NCBI ID   WP_000589162.1    Uniprot ID   Q8E1S3
Organism   Streptococcus agalactiae strain SagR92     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1128731..1139465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE858_RS05810 (SE858_05810) - 1129653..1131083 (+) 1431 WP_001217276.1 helix-turn-helix domain-containing protein -
  SE858_RS05815 (SE858_05815) recP/tkt 1131208..1133193 (+) 1986 WP_000141866.1 transketolase Machinery gene
  SE858_RS05820 (SE858_05820) - 1133406..1133711 (+) 306 WP_000711207.1 bacteriocin immunity protein -
  SE858_RS05825 (SE858_05825) pptA 1133731..1134465 (+) 735 WP_000589162.1 ABC transporter ATP-binding protein Regulator
  SE858_RS05830 (SE858_05830) - 1134469..1136073 (+) 1605 WP_001104587.1 ABC transporter permease -
  SE858_RS05835 (SE858_05835) - 1136281..1137666 (-) 1386 WP_001865878.1 PTS transporter subunit EIIC -
  SE858_RS05840 (SE858_05840) proB 1137807..1138610 (+) 804 WP_000820352.1 glutamate 5-kinase -

Sequence


Protein


Download         Length: 244 a.a.        Molecular weight: 27505.68 Da        Isoelectric Point: 4.7523

>NTDB_id=825331 SE858_RS05825 WP_000589162.1 1133731..1134465(+) (pptA) [Streptococcus agalactiae strain SagR92]
MIKFEHVSKVYGEKEALSDLTLSVKDGEIFGLIGHNGAGKTTTISILTSIIDATYGQVYIDDLLLTEHRDQIKKKIGYVP
DSPDIFLNLTAEEYWYFLAKIYDVAPEDIEARITKLVDIFELEEQRYNPIESFSHGMRQKVIVIGALLPNPDIWILDEPL
TGLDPQASFDLKEMMKEHAKNGKTVIFSTHVLAVAEQLCDRIGILKQGKLIFVGSLGELKMKYPDKDLETIYLELAGRQA
SREG

Nucleotide


Download         Length: 735 bp        

>NTDB_id=825331 SE858_RS05825 WP_000589162.1 1133731..1134465(+) (pptA) [Streptococcus agalactiae strain SagR92]
ATGATTAAGTTTGAACATGTTTCGAAAGTATACGGAGAAAAAGAAGCTCTCAGTGATTTAACCCTCTCTGTTAAAGATGG
TGAGATTTTTGGATTAATAGGTCACAATGGAGCAGGAAAAACAACGACAATTAGTATTCTAACATCTATTATTGATGCAA
CTTATGGCCAAGTCTATATTGATGACCTACTTTTGACAGAACATCGTGACCAAATTAAGAAAAAAATAGGTTATGTACCG
GACTCGCCAGATATTTTCTTAAATTTAACCGCAGAGGAATACTGGTACTTTTTAGCTAAAATTTATGACGTTGCCCCAGA
AGATATTGAAGCACGTATCACAAAATTGGTAGACATATTTGAACTAGAGGAGCAACGCTATAATCCTATTGAAAGTTTTT
CACATGGTATGCGTCAAAAAGTCATTGTTATAGGTGCCCTTCTTCCAAATCCTGACATTTGGATTCTAGATGAGCCGTTA
ACTGGTTTAGACCCTCAAGCTTCTTTTGATTTGAAAGAAATGATGAAAGAACATGCTAAAAATGGAAAAACAGTTATTTT
TTCAACACATGTCTTAGCAGTTGCAGAACAGTTATGCGACAGAATAGGTATTTTGAAACAAGGGAAATTAATCTTTGTCG
GTAGCTTAGGTGAGTTAAAAATGAAATATCCAGATAAAGATTTGGAAACTATCTATTTGGAATTAGCAGGACGTCAAGCT
AGTAGGGAGGGATAA

Domains


Predicted by InterProScan.

(17-160)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB Q8E1S3

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus thermophilus LMD-9

38.683

99.59

0.385

  pptA Streptococcus salivarius strain HSISS4

38.272

99.59

0.381