Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | SE859_RS06905 | Genome accession | NZ_CP138367 |
| Coordinates | 1379098..1381206 (+) | Length | 702 a.a. |
| NCBI ID | WP_319098982.1 | Uniprot ID | - |
| Organism | Streptococcus agalactiae strain R31-snf2-MTase2 | ||
| Function | degradation of ComX (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1374098..1386206
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SE859_RS06870 (SE859_06870) | - | 1374163..1374546 (-) | 384 | WP_000890151.1 | hypothetical protein | - |
| SE859_RS06875 (SE859_06875) | - | 1374556..1374984 (-) | 429 | WP_071664825.1 | hypothetical protein | - |
| SE859_RS06880 (SE859_06880) | dcm | 1374968..1376323 (-) | 1356 | WP_000670058.1 | DNA (cytosine-5-)-methyltransferase | - |
| SE859_RS06885 (SE859_06885) | - | 1376481..1377305 (-) | 825 | WP_000822756.1 | replication initiator protein A | - |
| SE859_RS06890 (SE859_06890) | - | 1377302..1377475 (-) | 174 | WP_001171243.1 | hypothetical protein | - |
| SE859_RS06895 (SE859_06895) | rplL | 1377735..1378100 (-) | 366 | WP_001196976.1 | 50S ribosomal protein L7/L12 | - |
| SE859_RS06900 (SE859_06900) | rplJ | 1378164..1378664 (-) | 501 | WP_001287285.1 | 50S ribosomal protein L10 | - |
| SE859_RS06905 (SE859_06905) | clpC | 1379098..1381206 (+) | 2109 | WP_319098982.1 | ATP-dependent Clp protease ATP-binding subunit | Regulator |
| SE859_RS06910 (SE859_06910) | mmuM | 1381300..1382244 (-) | 945 | WP_000532326.1 | homocysteine S-methyltransferase | - |
| SE859_RS06915 (SE859_06915) | - | 1382249..1383625 (-) | 1377 | WP_000427477.1 | amino acid permease | - |
| SE859_RS06920 (SE859_06920) | - | 1383755..1384405 (-) | 651 | WP_000120090.1 | HXXEE domain-containing protein | - |
| SE859_RS06925 (SE859_06925) | - | 1384563..1384886 (-) | 324 | WP_001867206.1 | HXXEE domain-containing protein | - |
| SE859_RS06930 (SE859_06930) | - | 1385158..1385787 (+) | 630 | WP_000140673.1 | TetR/AcrR family transcriptional regulator | - |
Sequence
Protein
Download Length: 702 a.a. Molecular weight: 77659.49 Da Isoelectric Point: 4.8753
>NTDB_id=825237 SE859_RS06905 WP_319098982.1 1379098..1381206(+) (clpC) [Streptococcus agalactiae strain R31-snf2-MTase2]
MANNNFYNRDPFGNMDDIFNSLMGNMGGYNSENKRYLINGREVTPEEFSQYRQTGKLPGQELNNQNTPTNQVSADSVLTK
LGTNLTDQARQHLLDPVIGRNKEIQETAEILARRTKNNPVLVGDAGVGKTAVIEGLAQAIINGDVPAAIKNKEIISIDIS
SLEAGTQYRGSFEENIQNIIKEVKETGNIILFFDEIHQILGAGSTGGDSGSKGLADILKPALSRGELTVIGATTQDEYRN
TILKNAALARRFNEVKVNAPSAQDTFNILMGIRNLYEQHHNVVLPDSVLKAAVDLSIQYIPQRSLPDKAIDLIDMTAAHL
AAQHPVTDLKSLEKEIAAQRDKQEKAVNTEDFEEALKVKTRIEELQNQIDNHTEGQKVTATINDIAMSIERLTGVPVSNM
GASDIERLKELGNRLKGKVIGQNDAVEAVARAIRRNRAGFDDGNRPIGSFLFVGPTGVGKTELAKQLAFDMFGSKDAIVR
LDMSEYNDRTAVSKLIGATAGYVGYDDNSNTLTERIRRNPYSIVLLDEIEKADPQVITLLLQVLDDGRLTDGQGNTINFK
NTVIIATSNAGFGNEAFTGDSDKVLKIMERISPYFRPEFLNRFNGVIEFSHLSKDDLNEIVDLMLDEVNQTIGKKGIDLV
VDENVKSHLIDLGYDEAMGVRPLRRVIEQEIRDRITDYYLDHTDVKHLKANLQDGQIVISER
MANNNFYNRDPFGNMDDIFNSLMGNMGGYNSENKRYLINGREVTPEEFSQYRQTGKLPGQELNNQNTPTNQVSADSVLTK
LGTNLTDQARQHLLDPVIGRNKEIQETAEILARRTKNNPVLVGDAGVGKTAVIEGLAQAIINGDVPAAIKNKEIISIDIS
SLEAGTQYRGSFEENIQNIIKEVKETGNIILFFDEIHQILGAGSTGGDSGSKGLADILKPALSRGELTVIGATTQDEYRN
TILKNAALARRFNEVKVNAPSAQDTFNILMGIRNLYEQHHNVVLPDSVLKAAVDLSIQYIPQRSLPDKAIDLIDMTAAHL
AAQHPVTDLKSLEKEIAAQRDKQEKAVNTEDFEEALKVKTRIEELQNQIDNHTEGQKVTATINDIAMSIERLTGVPVSNM
GASDIERLKELGNRLKGKVIGQNDAVEAVARAIRRNRAGFDDGNRPIGSFLFVGPTGVGKTELAKQLAFDMFGSKDAIVR
LDMSEYNDRTAVSKLIGATAGYVGYDDNSNTLTERIRRNPYSIVLLDEIEKADPQVITLLLQVLDDGRLTDGQGNTINFK
NTVIIATSNAGFGNEAFTGDSDKVLKIMERISPYFRPEFLNRFNGVIEFSHLSKDDLNEIVDLMLDEVNQTIGKKGIDLV
VDENVKSHLIDLGYDEAMGVRPLRRVIEQEIRDRITDYYLDHTDVKHLKANLQDGQIVISER
Nucleotide
Download Length: 2109 bp
>NTDB_id=825237 SE859_RS06905 WP_319098982.1 1379098..1381206(+) (clpC) [Streptococcus agalactiae strain R31-snf2-MTase2]
ATGGCAAATAATAATTTTTATAATCGTGACCCTTTTGGAAATATGGATGATATTTTTAATTCTCTAATGGGAAATATGGG
GGGCTATAATAGTGAGAATAAACGATACTTAATCAATGGACGGGAAGTTACTCCTGAAGAATTCAGTCAATATCGTCAAA
CTGGAAAACTCCCCGGTCAAGAGCTAAATAACCAAAATACTCCTACAAACCAAGTCTCTGCAGATAGTGTTTTGACTAAA
TTAGGAACTAATTTAACCGATCAAGCACGTCAGCATTTGCTAGATCCAGTTATTGGACGAAACAAAGAAATTCAGGAAAC
TGCAGAAATTCTAGCTCGTCGTACTAAAAATAATCCTGTTCTAGTTGGTGATGCAGGTGTTGGTAAAACAGCTGTTATTG
AAGGTTTGGCACAAGCAATTATAAATGGTGATGTCCCTGCTGCTATCAAAAATAAAGAAATCATTTCGATAGATATCTCT
AGCCTTGAAGCTGGCACCCAATATAGGGGTAGTTTTGAAGAAAATATTCAAAATATCATAAAAGAAGTTAAGGAAACAGG
AAATATTATTCTCTTCTTTGATGAAATACACCAAATATTAGGAGCCGGTTCAACTGGTGGTGATAGTGGCTCTAAGGGGC
TCGCAGATATACTTAAGCCTGCACTTTCACGTGGTGAATTAACGGTTATAGGTGCAACTACTCAAGATGAATATCGTAAC
ACCATTCTCAAGAATGCTGCCTTAGCACGCCGCTTTAACGAAGTTAAAGTCAATGCACCTTCTGCACAAGATACTTTCAA
TATCCTTATGGGGATAAGAAACCTCTATGAGCAACATCATAATGTTGTTTTACCTGACTCTGTTTTGAAAGCAGCTGTAG
ATTTATCTATTCAATACATACCACAAAGAAGTCTCCCTGATAAAGCAATTGACCTTATTGATATGACTGCTGCACACCTA
GCTGCGCAACATCCCGTAACTGACCTTAAATCCTTAGAAAAAGAAATCGCTGCGCAAAGAGACAAGCAAGAAAAAGCTGT
CAATACTGAAGATTTTGAAGAAGCTCTTAAGGTCAAGACACGCATTGAAGAGTTACAAAACCAGATTGATAATCATACCG
AAGGACAAAAAGTCACTGCAACTATCAATGATATCGCTATGTCAATTGAGCGTCTAACTGGAGTTCCTGTATCAAATATG
GGTGCTAGTGATATTGAACGCTTAAAAGAACTTGGCAATCGTCTAAAAGGTAAAGTCATTGGTCAAAATGATGCTGTTGA
GGCAGTTGCAAGAGCTATTCGCCGAAATCGTGCTGGTTTCGATGATGGTAATCGTCCGATTGGTAGCTTTCTATTTGTTG
GACCAACTGGAGTTGGTAAAACTGAGCTAGCAAAGCAATTAGCTTTTGATATGTTCGGATCAAAGGATGCTATCGTTAGA
CTTGATATGTCTGAATATAATGATCGTACTGCAGTTTCTAAGCTAATTGGAGCGACTGCTGGTTACGTTGGTTATGACGA
CAATAGTAATACACTAACAGAACGTATCCGTCGAAATCCTTATTCTATTGTTCTTCTTGATGAAATCGAAAAAGCTGACC
CGCAAGTTATCACGCTTCTCCTTCAAGTTCTAGATGATGGTCGTTTAACTGATGGTCAAGGAAACACTATTAACTTTAAA
AATACTGTTATCATTGCAACCTCAAATGCAGGTTTTGGAAACGAAGCATTTACAGGTGACAGCGATAAAGTCTTGAAAAT
TATGGAACGAATTTCTCCATATTTCCGTCCAGAATTTCTAAATCGTTTCAATGGTGTTATTGAATTCTCTCACCTAAGCA
AAGATGACTTAAACGAAATTGTAGATTTGATGCTTGATGAAGTTAACCAAACAATTGGCAAAAAAGGAATTGACCTTGTG
GTAGATGAAAATGTTAAATCACACTTAATTGACCTGGGTTATGACGAAGCAATGGGAGTACGTCCATTGCGCCGTGTCAT
CGAGCAAGAAATTCGAGATCGCATCACAGACTACTATCTCGATCATACAGATGTTAAACACCTAAAAGCTAATTTGCAAG
ATGGCCAAATCGTCATTTCTGAAAGATAA
ATGGCAAATAATAATTTTTATAATCGTGACCCTTTTGGAAATATGGATGATATTTTTAATTCTCTAATGGGAAATATGGG
GGGCTATAATAGTGAGAATAAACGATACTTAATCAATGGACGGGAAGTTACTCCTGAAGAATTCAGTCAATATCGTCAAA
CTGGAAAACTCCCCGGTCAAGAGCTAAATAACCAAAATACTCCTACAAACCAAGTCTCTGCAGATAGTGTTTTGACTAAA
TTAGGAACTAATTTAACCGATCAAGCACGTCAGCATTTGCTAGATCCAGTTATTGGACGAAACAAAGAAATTCAGGAAAC
TGCAGAAATTCTAGCTCGTCGTACTAAAAATAATCCTGTTCTAGTTGGTGATGCAGGTGTTGGTAAAACAGCTGTTATTG
AAGGTTTGGCACAAGCAATTATAAATGGTGATGTCCCTGCTGCTATCAAAAATAAAGAAATCATTTCGATAGATATCTCT
AGCCTTGAAGCTGGCACCCAATATAGGGGTAGTTTTGAAGAAAATATTCAAAATATCATAAAAGAAGTTAAGGAAACAGG
AAATATTATTCTCTTCTTTGATGAAATACACCAAATATTAGGAGCCGGTTCAACTGGTGGTGATAGTGGCTCTAAGGGGC
TCGCAGATATACTTAAGCCTGCACTTTCACGTGGTGAATTAACGGTTATAGGTGCAACTACTCAAGATGAATATCGTAAC
ACCATTCTCAAGAATGCTGCCTTAGCACGCCGCTTTAACGAAGTTAAAGTCAATGCACCTTCTGCACAAGATACTTTCAA
TATCCTTATGGGGATAAGAAACCTCTATGAGCAACATCATAATGTTGTTTTACCTGACTCTGTTTTGAAAGCAGCTGTAG
ATTTATCTATTCAATACATACCACAAAGAAGTCTCCCTGATAAAGCAATTGACCTTATTGATATGACTGCTGCACACCTA
GCTGCGCAACATCCCGTAACTGACCTTAAATCCTTAGAAAAAGAAATCGCTGCGCAAAGAGACAAGCAAGAAAAAGCTGT
CAATACTGAAGATTTTGAAGAAGCTCTTAAGGTCAAGACACGCATTGAAGAGTTACAAAACCAGATTGATAATCATACCG
AAGGACAAAAAGTCACTGCAACTATCAATGATATCGCTATGTCAATTGAGCGTCTAACTGGAGTTCCTGTATCAAATATG
GGTGCTAGTGATATTGAACGCTTAAAAGAACTTGGCAATCGTCTAAAAGGTAAAGTCATTGGTCAAAATGATGCTGTTGA
GGCAGTTGCAAGAGCTATTCGCCGAAATCGTGCTGGTTTCGATGATGGTAATCGTCCGATTGGTAGCTTTCTATTTGTTG
GACCAACTGGAGTTGGTAAAACTGAGCTAGCAAAGCAATTAGCTTTTGATATGTTCGGATCAAAGGATGCTATCGTTAGA
CTTGATATGTCTGAATATAATGATCGTACTGCAGTTTCTAAGCTAATTGGAGCGACTGCTGGTTACGTTGGTTATGACGA
CAATAGTAATACACTAACAGAACGTATCCGTCGAAATCCTTATTCTATTGTTCTTCTTGATGAAATCGAAAAAGCTGACC
CGCAAGTTATCACGCTTCTCCTTCAAGTTCTAGATGATGGTCGTTTAACTGATGGTCAAGGAAACACTATTAACTTTAAA
AATACTGTTATCATTGCAACCTCAAATGCAGGTTTTGGAAACGAAGCATTTACAGGTGACAGCGATAAAGTCTTGAAAAT
TATGGAACGAATTTCTCCATATTTCCGTCCAGAATTTCTAAATCGTTTCAATGGTGTTATTGAATTCTCTCACCTAAGCA
AAGATGACTTAAACGAAATTGTAGATTTGATGCTTGATGAAGTTAACCAAACAATTGGCAAAAAAGGAATTGACCTTGTG
GTAGATGAAAATGTTAAATCACACTTAATTGACCTGGGTTATGACGAAGCAATGGGAGTACGTCCATTGCGCCGTGTCAT
CGAGCAAGAAATTCGAGATCGCATCACAGACTACTATCTCGATCATACAGATGTTAAACACCTAAAAGCTAATTTGCAAG
ATGGCCAAATCGTCATTTCTGAAAGATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Lactococcus lactis subsp. cremoris KW2 |
47.489 |
99.288 |
0.472 |
| clpE | Streptococcus pneumoniae TIGR4 |
48.983 |
91.026 |
0.446 |
| clpE | Streptococcus pneumoniae Rx1 |
48.983 |
91.026 |
0.446 |
| clpE | Streptococcus pneumoniae D39 |
48.983 |
91.026 |
0.446 |
| clpE | Streptococcus pneumoniae R6 |
48.983 |
91.026 |
0.446 |
| clpE | Streptococcus mutans UA159 |
49.367 |
90.028 |
0.444 |
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
43.881 |
95.442 |
0.419 |
| clpC | Streptococcus pneumoniae TIGR4 |
43.312 |
89.459 |
0.387 |
| clpC | Streptococcus pneumoniae Rx1 |
43.842 |
86.752 |
0.38 |
| clpC | Streptococcus pneumoniae D39 |
43.842 |
86.752 |
0.38 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
41.706 |
90.171 |
0.376 |
| clpC | Streptococcus thermophilus LMD-9 |
42.857 |
86.752 |
0.372 |
| clpC | Streptococcus thermophilus LMG 18311 |
42.693 |
86.752 |
0.37 |
| clpC | Streptococcus mutans UA159 |
40.566 |
90.598 |
0.368 |