Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   SE117_RS09060 Genome accession   NZ_CP138363
Coordinates   1884995..1885735 (-) Length   246 a.a.
NCBI ID   WP_000216874.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 15V8707     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1879995..1890735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE117_RS09035 (SE117_09035) hemH 1880872..1881795 (-) 924 WP_000162878.1 ferrochelatase -
  SE117_RS09040 (SE117_09040) hemE 1881853..1882890 (-) 1038 WP_000233540.1 uroporphyrinogen decarboxylase -
  SE117_RS09045 (SE117_09045) - 1882880..1882966 (-) 87 WP_031875110.1 hypothetical protein -
  SE117_RS09050 (SE117_09050) traP 1883152..1883655 (+) 504 WP_000737980.1 signal transduction protein TRAP -
  SE117_RS09055 (SE117_09055) ecsB 1883779..1885002 (-) 1224 WP_069994134.1 ABC transporter permease EcsB -
  SE117_RS09060 (SE117_09060) pptA 1884995..1885735 (-) 741 WP_000216874.1 ABC transporter ATP-binding protein EcsA Regulator
  SE117_RS09065 (SE117_09065) - 1885869..1886291 (+) 423 WP_000004981.1 HIT family protein -
  SE117_RS09070 (SE117_09070) - 1886433..1886798 (+) 366 WP_000648118.1 YtxH domain-containing protein -
  SE117_RS09075 (SE117_09075) - 1887530..1888087 (+) 558 WP_000477959.1 DUF3267 domain-containing protein -
  SE117_RS09080 (SE117_09080) - 1888292..1889254 (+) 963 WP_000782119.1 foldase protein PrsA -
  SE117_RS09085 (SE117_09085) yhaM 1889375..1890316 (-) 942 WP_319097455.1 3'-5' exoribonuclease YhaM -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27687.02 Da        Isoelectric Point: 4.6672

>NTDB_id=825148 SE117_RS09060 WP_000216874.1 1884995..1885735(-) (pptA) [Staphylococcus aureus strain 15V8707]
MTVKVEQLTGGYGKRPVIKDINFELNKGEIVGLIGLNGAGKSTTIKHMLGLLTPMEGSLSISDININDDIEAYRRKLSYI
PESPVIYEELTLEEHIEMTAMAYDIDRDEAMNRAMPLLKTFRLENELKVFPSHFSKGMKQKVMIICAFIVNPELYIIDEP
FLGLDPLGIQSMLDLMVEKKNEGRTVLMSTHILATAERYCDRFIILDEGEVVAFGDLEALRQQTGLHNQTLDDIYIHVTQ
GGDVHA

Nucleotide


Download         Length: 741 bp        

>NTDB_id=825148 SE117_RS09060 WP_000216874.1 1884995..1885735(-) (pptA) [Staphylococcus aureus strain 15V8707]
ATGACAGTTAAAGTAGAACAGCTTACAGGTGGATATGGAAAACGCCCTGTAATTAAAGATATAAATTTTGAATTAAACAA
AGGCGAAATCGTTGGACTTATTGGCCTTAATGGCGCTGGTAAGAGTACAACGATTAAACATATGCTAGGATTGCTTACAC
CTATGGAAGGATCTCTATCAATTTCAGATATCAACATTAATGATGACATAGAGGCTTATAGAAGAAAGTTATCTTATATT
CCGGAATCACCGGTTATTTATGAAGAACTCACATTAGAGGAACACATTGAGATGACAGCAATGGCATATGATATTGATCG
TGATGAAGCGATGAATCGAGCAATGCCATTATTAAAGACATTCCGTTTAGAAAATGAATTGAAAGTTTTTCCGAGTCATT
TTTCTAAGGGGATGAAACAAAAAGTCATGATTATTTGTGCGTTTATCGTTAATCCCGAATTGTATATTATAGACGAACCA
TTCCTTGGTCTAGATCCATTAGGAATTCAATCCATGTTAGATTTAATGGTTGAAAAGAAAAACGAAGGTAGAACCGTTCT
AATGAGTACACATATTTTAGCAACAGCTGAACGTTATTGTGATCGTTTTATCATACTAGACGAAGGTGAAGTCGTTGCAT
TTGGAGATTTAGAAGCATTGAGACAACAAACTGGCTTACATAATCAAACGTTAGACGATATATATATTCATGTGACGCAA
GGTGGAGATGTACATGCGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(19-161)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

57.322

97.154

0.557
  pptA Streptococcus thermophilus LMD-9

56.067

97.154

0.545