Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   SE116_RS08920 Genome accession   NZ_CP138362
Coordinates   1869235..1869975 (-) Length   246 a.a.
NCBI ID   WP_000216874.1    Uniprot ID   -
Organism   Staphylococcus aureus strain V315     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1864235..1874975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE116_RS08895 (SE116_08895) hemH 1865112..1866035 (-) 924 WP_000162878.1 ferrochelatase -
  SE116_RS08900 (SE116_08900) hemE 1866093..1867130 (-) 1038 WP_000233540.1 uroporphyrinogen decarboxylase -
  SE116_RS08905 (SE116_08905) - 1867120..1867206 (-) 87 WP_031875110.1 hypothetical protein -
  SE116_RS08910 (SE116_08910) traP 1867392..1867895 (+) 504 WP_000737980.1 signal transduction protein TRAP -
  SE116_RS08915 (SE116_08915) ecsB 1868019..1869242 (-) 1224 WP_069994134.1 ABC transporter permease EcsB -
  SE116_RS08920 (SE116_08920) pptA 1869235..1869975 (-) 741 WP_000216874.1 ABC transporter ATP-binding protein EcsA Regulator
  SE116_RS08925 (SE116_08925) - 1870109..1870531 (+) 423 WP_000004981.1 HIT family protein -
  SE116_RS08930 (SE116_08930) - 1870673..1871038 (+) 366 WP_000648118.1 YtxH domain-containing protein -
  SE116_RS08935 (SE116_08935) - 1871770..1872327 (+) 558 WP_000477959.1 DUF3267 domain-containing protein -
  SE116_RS08940 (SE116_08940) - 1872532..1873494 (+) 963 WP_000782119.1 foldase protein PrsA -
  SE116_RS08945 (SE116_08945) yhaM 1873615..1874556 (-) 942 WP_001244175.1 3'-5' exoribonuclease YhaM -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27687.02 Da        Isoelectric Point: 4.6672

>NTDB_id=825059 SE116_RS08920 WP_000216874.1 1869235..1869975(-) (pptA) [Staphylococcus aureus strain V315]
MTVKVEQLTGGYGKRPVIKDINFELNKGEIVGLIGLNGAGKSTTIKHMLGLLTPMEGSLSISDININDDIEAYRRKLSYI
PESPVIYEELTLEEHIEMTAMAYDIDRDEAMNRAMPLLKTFRLENELKVFPSHFSKGMKQKVMIICAFIVNPELYIIDEP
FLGLDPLGIQSMLDLMVEKKNEGRTVLMSTHILATAERYCDRFIILDEGEVVAFGDLEALRQQTGLHNQTLDDIYIHVTQ
GGDVHA

Nucleotide


Download         Length: 741 bp        

>NTDB_id=825059 SE116_RS08920 WP_000216874.1 1869235..1869975(-) (pptA) [Staphylococcus aureus strain V315]
ATGACAGTTAAAGTAGAACAGCTTACAGGTGGATATGGAAAACGCCCTGTAATTAAAGATATAAATTTTGAATTAAACAA
AGGCGAAATCGTTGGACTTATTGGCCTTAATGGCGCTGGTAAGAGTACAACGATTAAACATATGCTAGGATTGCTTACAC
CTATGGAAGGATCTCTATCAATTTCAGATATCAACATTAATGATGACATAGAGGCTTATAGAAGAAAGTTATCTTATATT
CCGGAATCACCGGTTATTTATGAAGAACTCACATTAGAGGAACACATTGAGATGACAGCAATGGCATATGATATTGATCG
TGATGAAGCGATGAATCGAGCAATGCCATTATTAAAGACATTCCGTTTAGAAAATGAATTGAAAGTTTTTCCGAGTCATT
TTTCTAAGGGGATGAAACAAAAAGTCATGATTATTTGTGCGTTTATCGTTAATCCCGAATTGTATATTATAGACGAACCA
TTCCTTGGTCTAGATCCATTAGGAATTCAATCCATGTTAGATTTAATGGTTGAAAAGAAAAACGAAGGTAGAACCGTTCT
AATGAGTACACATATTTTAGCAACAGCTGAACGTTATTGTGATCGTTTTATCATACTAGACGAAGGTGAAGTCGTTGCAT
TTGGAGATTTAGAAGCATTGAGACAACAAACTGGCTTACATAATCAAACGTTAGACGATATATATATTCATGTGACGCAA
GGTGGAGATGTACATGCGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(19-161)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

57.322

97.154

0.557
  pptA Streptococcus thermophilus LMD-9

56.067

97.154

0.545