Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   SE116_RS03680 Genome accession   NZ_CP138362
Coordinates   782173..783255 (+) Length   360 a.a.
NCBI ID   WP_014532585.1    Uniprot ID   -
Organism   Staphylococcus aureus strain V315     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 777173..788255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE116_RS03660 (SE116_03660) gdpS 777543..778613 (-) 1071 WP_061823937.1 GGDEF domain-containing protein GdpS -
  SE116_RS03665 (SE116_03665) - 778931..779986 (+) 1056 WP_196499628.1 glycosyltransferase family 4 protein -
  SE116_RS03670 (SE116_03670) - 780158..780799 (-) 642 WP_000192947.1 YigZ family protein -
  SE116_RS03675 (SE116_03675) fakB1 780943..781809 (+) 867 WP_319162491.1 fatty acid kinase binding subunit FakB1 -
  SE116_RS03680 (SE116_03680) comFA 782173..783255 (+) 1083 WP_014532585.1 DEAD/DEAH box helicase Machinery gene
  SE116_RS03685 (SE116_03685) - 783248..783922 (+) 675 WP_001057965.1 ComF family protein -
  SE116_RS03690 (SE116_03690) hpf 783983..784555 (+) 573 WP_000617735.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  SE116_RS03695 (SE116_03695) secA 784969..787500 (+) 2532 WP_000506531.1 preprotein translocase subunit SecA -
  SE116_RS03700 (SE116_03700) - 787542..787640 (+) 99 Protein_716 hypothetical protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 41994.47 Da        Isoelectric Point: 9.6802

>NTDB_id=825006 SE116_RS03680 WP_014532585.1 782173..783255(+) (comFA) [Staphylococcus aureus strain V315]
MDNVTRYKITESSQSASQAYYHLSFELSEQQSYASEHIVRAIRMRQTILLYAVTGAGKTEMMFQGIQYARRQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSSQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKSLQQALKSSSK
VEHATIYMTATPPKQLLSEIPNENIIKLPARFHKKSLPVPKYRYFKLNNNKIQKMLYRILQDQINNQRYTLVFFNNIETM
IKTFSVYKQKITKLTYIHSEDVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQKMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=825006 SE116_RS03680 WP_014532585.1 782173..783255(+) (comFA) [Staphylococcus aureus strain V315]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTGCATCACAAGCATATTATCATCTCTCATTTGAATT
GTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAATGAGACAAACGATTTTGTTATATGCAGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGACGACAGGGAGATAATATAGCTATTGTGTCA
CCACGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGTCAACAATTTGAAGGGCATTTTGTTGTATGCACAGTGCATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAGTTTACAACAAGCATTGAAGTCATCTTCTAAA
GTTGAACATGCAACGATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCAACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGCTATTTCAAACTTAATAATAATAAGATTCAGA
AAATGTTATATCGAATTTTACAAGATCAAATTAATAATCAACGTTATACATTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATATATCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACATTTCGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TGGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTTCATGAAGGAGTAAGTATGAATATGATTCAAGCAAAAAAAGAGATTCAAAA
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(25-173)

Helicase conserved C-terminal domain (Helicase_C)

(215-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

38.938

94.167

0.367