Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   SE116_RS00240 Genome accession   NZ_CP138362
Coordinates   57130..57543 (+) Length   137 a.a.
NCBI ID   WP_044291637.1    Uniprot ID   -
Organism   Staphylococcus aureus strain V315     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 52130..62543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE116_RS00210 (SE116_00210) - 52854..53156 (+) 303 WP_114291279.1 hypothetical protein -
  SE116_RS00215 (SE116_00215) - 53099..54652 (+) 1554 WP_319162212.1 DUF4209 domain-containing protein -
  SE116_RS00220 (SE116_00220) - 54696..55052 (+) 357 WP_226046988.1 hypothetical protein -
  SE116_RS00225 (SE116_00225) - 55241..55858 (+) 618 WP_319162214.1 hypothetical protein -
  SE116_RS00230 (SE116_00230) - 56298..56456 (+) 159 WP_181855101.1 hypothetical protein -
  SE116_RS00235 (SE116_00235) - 56622..57029 (-) 408 WP_044291635.1 alkylhydroperoxidase -
  SE116_RS00240 (SE116_00240) lrpC 57130..57543 (+) 414 WP_044291637.1 Lrp/AsnC family transcriptional regulator Machinery gene
  SE116_RS00245 (SE116_00245) - 57605..58078 (+) 474 WP_044291639.1 GNAT family N-acetyltransferase -
  SE116_RS00250 (SE116_00250) - 58186..59172 (-) 987 WP_319162218.1 tRNA-dihydrouridine synthase -
  SE116_RS00255 (SE116_00255) - 59481..59684 (+) 204 WP_001641272.1 DUF6007 family protein -
  SE116_RS00260 (SE116_00260) - 59733..60029 (+) 297 WP_000201643.1 TfoX/Sxy family protein -
  SE116_RS00265 (SE116_00265) - 60237..60839 (+) 603 WP_044291652.1 hypothetical protein -
  SE116_RS00270 (SE116_00270) - 61131..62045 (-) 915 WP_044291654.1 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 16040.40 Da        Isoelectric Point: 4.8188

>NTDB_id=824993 SE116_RS00240 WP_044291637.1 57130..57543(+) (lrpC) [Staphylococcus aureus strain V315]
MNDLINEKIINVLLNNSRITINELRKQVNLSAPAVRERVNKLEDQGIIKGYTINIDYKELGYDVEILIELTIKNNRYKDF
KEFISKQDNVEFCYRVSGEACFVFKVRLENMDEVETFVDTIQPYGQTKCQFIFSSVV

Nucleotide


Download         Length: 414 bp        

>NTDB_id=824993 SE116_RS00240 WP_044291637.1 57130..57543(+) (lrpC) [Staphylococcus aureus strain V315]
ATGAATGATTTAATAAATGAAAAAATAATCAACGTTTTGTTAAATAATAGTAGAATTACTATTAATGAATTAAGAAAACA
AGTGAACTTATCTGCTCCAGCTGTAAGAGAAAGGGTAAATAAACTTGAAGATCAAGGTATTATAAAAGGTTATACAATTA
ACATAGATTATAAGGAATTAGGTTACGATGTAGAAATATTAATTGAGTTAACTATAAAGAATAATAGATACAAAGATTTT
AAAGAATTTATTTCAAAACAAGATAATGTTGAGTTTTGTTATCGTGTATCAGGAGAGGCATGTTTTGTATTTAAGGTTCG
GTTGGAAAATATGGATGAAGTGGAAACATTTGTTGACACCATACAGCCATATGGGCAGACAAAATGTCAGTTTATCTTTT
CATCAGTTGTGTAA

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(68-134)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

43.284

97.81

0.423