Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   M2Y46_RS06850 Genome accession   NZ_AP023347
Coordinates   1420459..1421772 (-) Length   437 a.a.
NCBI ID   WP_248415348.1    Uniprot ID   -
Organism   Helicobacter pylori strain JSHR6     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1415459..1426772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2Y46_RS06820 (JSHR6_13680) nadC 1415922..1416743 (-) 822 WP_248415345.1 carboxylating nicotinate-nucleotide diphosphorylase -
  M2Y46_RS06825 (JSHR6_13690) nadA 1416743..1417753 (-) 1011 WP_245040815.1 quinolinate synthase NadA -
  M2Y46_RS06830 (JSHR6_13700) - 1417743..1418546 (-) 804 WP_248415346.1 phosphatidylserine decarboxylase -
  M2Y46_RS06835 (JSHR6_13710) - 1418543..1419046 (-) 504 WP_000953085.1 hypothetical protein -
  M2Y46_RS06840 (JSHR6_13720) - 1419059..1419553 (-) 495 WP_248415347.1 hypothetical protein -
  M2Y46_RS06845 (JSHR6_13730) mqnP 1419546..1420388 (-) 843 WP_232255053.1 menaquinone biosynthesis prenyltransferase MqnP -
  M2Y46_RS06850 (JSHR6_13740) comEC/comE3 1420459..1421772 (-) 1314 WP_248415348.1 ComEC/Rec2 family competence protein Machinery gene
  M2Y46_RS06855 (JSHR6_13750) - 1421769..1423229 (-) 1461 WP_248415349.1 replicative DNA helicase -
  M2Y46_RS06860 (JSHR6_13760) - 1423240..1424634 (-) 1395 WP_248415350.1 NAD(P)H-hydrate dehydratase -
  M2Y46_RS06865 (JSHR6_13770) crdS 1424637..1425839 (-) 1203 WP_248415753.1 HAMP domain-containing sensor histidine kinase -
  M2Y46_RS06870 (JSHR6_13780) crdR 1425805..1426446 (-) 642 WP_001169798.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50000.88 Da        Isoelectric Point: 9.9068

>NTDB_id=82499 M2Y46_RS06850 WP_248415348.1 1420459..1421772(-) (comEC/comE3) [Helicobacter pylori strain JSHR6]
MKDKTFQGAFELLTTPKEYLLCGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFALKLQSKGMI
FYATIKEPLKNLQYRHAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHWRRFIDSAHSSALVGNLYRALFIGDSL
SKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLARSFQVISLS
ALIFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDSILNMPLTIPTISVSSPLWLLGAHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPNLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=82499 M2Y46_RS06850 WP_248415348.1 1420459..1421772(-) (comEC/comE3) [Helicobacter pylori strain JSHR6]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCGCTTAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGCTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATGCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCACGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
GTTTTTGGAGTCTTTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGAAAACAAGATTTCAAATCGCATT
GGCGCCGTTTCATTGACAGCGCTCATTCAAGCGCTTTAGTGGGTAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AGTAAAGACTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGATTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTCCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTTCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTGGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGCGCGATCTTTTCAGGTCATAAGCTTAAGC
GCGCTAATTTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTTTTGCATGCTGTGGGTTTGGGGTCTTTGCTGGATAGTA
TTTTAAACATGCCTTTAACAATCCCTACGATTTCGGTTTCTTCGCCTTTATGGCTTTTGGGGGCGCATTTATTTTTAACG
ATTCTAAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGTGCAGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAATTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(158-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.508

100

0.945

Multiple sequence alignment