Detailed information    

insolico Bioinformatically predicted

Overview

Name   irvR   Type   Regulator
Locus tag   SE087_RS10050 Genome accession   NZ_CP138360
Coordinates   2016913..2017626 (+) Length   237 a.a.
NCBI ID   WP_001031451.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 17CS1042     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2011913..2022626
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE087_RS09980 (SE087_09980) - 2012460..2013248 (-) 789 WP_000134097.1 ATP-binding protein -
  SE087_RS09985 (SE087_09985) - 2013241..2013462 (-) 222 WP_001077279.1 DUF2483 family protein -
  SE087_RS09990 (SE087_09990) - 2013472..2013732 (-) 261 WP_000291090.1 DUF1108 family protein -
  SE087_RS09995 (SE087_09995) - 2013826..2013987 (-) 162 WP_000048119.1 DUF1270 family protein -
  SE087_RS10000 (SE087_10000) - 2013980..2014201 (-) 222 WP_319084106.1 hypothetical protein -
  SE087_RS10005 (SE087_10005) - 2014272..2014484 (+) 213 WP_000461464.1 hypothetical protein -
  SE087_RS10010 (SE087_10010) - 2014499..2014576 (-) 78 Protein_1934 hypothetical protein -
  SE087_RS10015 (SE087_10015) - 2014592..2015341 (-) 750 WP_001148590.1 phage antirepressor KilAC domain-containing protein -
  SE087_RS10020 (SE087_10020) - 2015391..2015747 (+) 357 WP_319084133.1 DUF2513 domain-containing protein -
  SE087_RS10025 (SE087_10025) - 2015742..2015936 (-) 195 WP_234747029.1 hypothetical protein -
  SE087_RS10030 (SE087_10030) - 2015996..2016238 (+) 243 WP_000498529.1 hypothetical protein -
  SE087_RS10035 (SE087_10035) - 2016186..2016494 (-) 309 WP_001025399.1 hypothetical protein -
  SE087_RS10040 (SE087_10040) - 2016510..2016779 (-) 270 WP_000854067.1 helix-turn-helix transcriptional regulator -
  SE087_RS10045 (SE087_10045) - 2016776..2016950 (-) 175 Protein_1941 transcriptional regulator -
  SE087_RS10050 (SE087_10050) irvR 2016913..2017626 (+) 714 WP_001031451.1 XRE family transcriptional regulator Regulator
  SE087_RS10055 (SE087_10055) - 2017638..2017784 (+) 147 WP_001049401.1 hypothetical protein -
  SE087_RS10060 (SE087_10060) - 2017781..2017966 (+) 186 WP_000100503.1 hypothetical protein -
  SE087_RS10065 (SE087_10065) - 2018002..2018985 (+) 984 WP_000439124.1 DUF3644 domain-containing protein -
  SE087_RS10070 (SE087_10070) - 2019164..2020210 (+) 1047 WP_319084151.1 tyrosine-type recombinase/integrase -
  SE087_RS10075 (SE087_10075) yfkAB 2020255..2021400 (+) 1146 WP_319084153.1 radical SAM/CxCxxxxC motif protein YfkAB -
  SE087_RS10080 (SE087_10080) - 2021660..2022190 (-) 531 WP_000184381.1 acyl-CoA thioesterase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27026.64 Da        Isoelectric Point: 5.4202

>NTDB_id=824974 SE087_RS10050 WP_001031451.1 2016913..2017626(+) (irvR) [Staphylococcus aureus strain 17CS1042]
MNKERNIIIAKNIRKFLNDSNMSQKKLAELINIKPSTLSDYLNLRSNPSHGVIQRIADVFEVGKSDIDTTYKDDNDITSI
YNKLTPPRQENVLNYANEQLDEQNSKGDNVVDINSYKQDKTPVNVNGCVSAGVGERLHDETLFTEMVKAPVPPHDLALKV
NGDSMEPMFKDGEIIFVEKTHNIKNGQIGIFIIEEEAYVKKVFVEDDRLTLVSLNKEYRDLHFYRNESVRLVGKVIL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=824974 SE087_RS10050 WP_001031451.1 2016913..2017626(+) (irvR) [Staphylococcus aureus strain 17CS1042]
ATGAACAAAGAAAGAAATATTATTATAGCCAAAAACATTAGAAAATTTCTCAACGATTCAAATATGTCTCAAAAGAAACT
TGCTGAACTCATTAACATAAAACCATCTACTTTAAGCGATTATTTAAATTTACGTTCCAACCCCTCTCACGGCGTTATAC
AAAGGATAGCTGATGTTTTCGAGGTTGGTAAAAGCGACATAGATACTACATACAAAGACGATAACGACATCACTTCCATA
TACAACAAACTCACACCTCCCCGCCAAGAAAACGTACTTAACTATGCAAATGAACAATTAGATGAACAGAATTCTAAAGG
AGATAACGTTGTAGATATTAATTCATATAAACAAGATAAAACTCCAGTTAATGTCAATGGATGTGTCTCCGCTGGTGTAG
GAGAACGACTGCACGATGAAACGCTATTCACTGAAATGGTTAAAGCCCCTGTTCCTCCACATGATTTAGCATTAAAAGTT
AATGGCGATTCTATGGAGCCTATGTTTAAAGATGGCGAAATCATATTTGTGGAGAAAACTCATAATATAAAGAATGGGCA
AATAGGTATATTCATCATCGAAGAAGAGGCTTATGTTAAGAAAGTCTTCGTTGAGGATGACAGATTGACTTTAGTCTCAT
TGAACAAAGAATACCGCGACCTTCACTTTTATAGAAATGAAAGTGTGAGGTTAGTTGGAAAAGTTATTTTATAG

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(127-236)

Helix-turn-helix (HTH_3)

(13-63)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  irvR Streptococcus mutans UA159

32.857

100

0.388