Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   SE087_RS03915 Genome accession   NZ_CP138360
Coordinates   808030..809112 (+) Length   360 a.a.
NCBI ID   WP_014532585.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 17CS1042     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 803030..814112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE087_RS03895 (SE087_03895) gdpS 803400..804470 (-) 1071 WP_319093977.1 GGDEF domain-containing protein GdpS -
  SE087_RS03900 (SE087_03900) - 804788..805843 (+) 1056 WP_000258151.1 glycosyltransferase family 4 protein -
  SE087_RS03905 (SE087_03905) - 806015..806656 (-) 642 WP_217175789.1 YigZ family protein -
  SE087_RS03910 (SE087_03910) fakB1 806800..807666 (+) 867 WP_000686342.1 fatty acid kinase binding subunit FakB1 -
  SE087_RS03915 (SE087_03915) comFA 808030..809112 (+) 1083 WP_014532585.1 DEAD/DEAH box helicase Machinery gene
  SE087_RS03920 (SE087_03920) - 809105..809779 (+) 675 WP_319093997.1 ComF family protein -
  SE087_RS03925 (SE087_03925) hpf 809840..810412 (+) 573 WP_000617735.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  SE087_RS03930 (SE087_03930) secA 810826..813357 (+) 2532 WP_000506531.1 preprotein translocase subunit SecA -
  SE087_RS03935 (SE087_03935) - 813399..813497 (+) 99 Protein_763 hypothetical protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 41994.47 Da        Isoelectric Point: 9.6802

>NTDB_id=824918 SE087_RS03915 WP_014532585.1 808030..809112(+) (comFA) [Staphylococcus aureus strain 17CS1042]
MDNVTRYKITESSQSASQAYYHLSFELSEQQSYASEHIVRAIRMRQTILLYAVTGAGKTEMMFQGIQYARRQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSSQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKSLQQALKSSSK
VEHATIYMTATPPKQLLSEIPNENIIKLPARFHKKSLPVPKYRYFKLNNNKIQKMLYRILQDQINNQRYTLVFFNNIETM
IKTFSVYKQKITKLTYIHSEDVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQKMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=824918 SE087_RS03915 WP_014532585.1 808030..809112(+) (comFA) [Staphylococcus aureus strain 17CS1042]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTGCATCACAAGCATATTATCATCTCTCATTTGAATT
GTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAATGAGACAAACGATTTTGTTATATGCAGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGACGACAGGGAGATAATATAGCTATTGTGTCA
CCACGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGTCAACAATTTGAAGGGCATTTTGTTGTATGCACAGTGCATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCTATGGATAAAAGTTTACAACAAGCATTGAAGTCATCTTCTAAA
GTTGAACATGCAACGATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCAACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGCTATTTCAAACTTAATAATAATAAGATTCAGA
AAATGTTATATCGAATTTTACAAGATCAAATTAATAATCAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATATATCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACATTTCGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TGGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTTCATGAAGGAGTAAGTATGAATATGATTCAAGCTAAAAAAGAGATTCAAAA
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(25-173)

Helicase conserved C-terminal domain (Helicase_C)

(215-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

38.938

94.167

0.367