Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   SE087_RS03820 Genome accession   NZ_CP138360
Coordinates   789997..790968 (+) Length   323 a.a.
NCBI ID   WP_000876318.1    Uniprot ID   A0A0H2XIG1
Organism   Staphylococcus aureus strain 17CS1042     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 784997..795968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE087_RS03800 (SE087_03800) nrdI 786067..786465 (+) 399 WP_000692521.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -
  SE087_RS03805 (SE087_03805) nrdE 786428..788533 (+) 2106 WP_000855505.1 class 1b ribonucleoside-diphosphate reductase subunit alpha -
  SE087_RS03810 (SE087_03810) nrdF 788651..789622 (+) 972 WP_000562498.1 class 1b ribonucleoside-diphosphate reductase subunit beta -
  SE087_RS03815 (SE087_03815) - 789803..789922 (+) 120 WP_014532584.1 hypothetical protein -
  SE087_RS03820 (SE087_03820) ceuB 789997..790968 (+) 972 WP_000876318.1 ABC transporter permease Machinery gene
  SE087_RS03825 (SE087_03825) - 790955..791911 (+) 957 WP_001245577.1 iron chelate uptake ABC transporter family permease subunit -
  SE087_RS03830 (SE087_03830) - 791908..792669 (+) 762 WP_217175937.1 ABC transporter ATP-binding protein -
  SE087_RS03835 (SE087_03835) - 792788..793816 (+) 1029 WP_000754446.1 ferrated catecholamine ABC transporter substrate-binding lipoprotein SstD -
  SE087_RS03840 (SE087_03840) - 793876..793944 (+) 69 Protein_744 hypothetical protein -
  SE087_RS03845 (SE087_03845) - 793922..795238 (-) 1317 WP_319096831.1 ISL3-like element ISSau8 family transposase -
  SE087_RS03850 (SE087_03850) - 795582..795896 (-) 315 WP_001127269.1 CHY zinc finger protein -

Sequence

Protein


Download         Length: 323 a.a.        Molecular weight: 35582.13 Da        Isoelectric Point: 10.1194

>NTDB_id=824917 SE087_RS03820 WP_000876318.1 789997..790968(+) (ceuB) [Staphylococcus aureus strain 17CS1042]
MKYLLKGNILLLLLILLTIISLFIGVSELSIKDLLHLTESQRNILFSSRIPRTMSILIAGSSLALAGLIMQQMMQNKFVS
PTTAGTMEWAKLGILIALLFFPTGHILLKLVFAVICSICGTFLFVKIIDFIKVKDVIFVPLLGIMMGGIVASFTTFISLR
TNAVQSIGNWLNGNFAIITSGRYEILYLSIPLLALTYLFANHFTIVGMGKDFTNNLGLSYEKLINIALFITATITALVVV
TVGTLPFLGLVIPNIISIYRGDHLKNAIPHTMMLGAIFVLFSDIVGRIVVYPYEINIGLTIGVFGTIIFLILLMKGRKNY
AQQ

Nucleotide


Download         Length: 972 bp        

>NTDB_id=824917 SE087_RS03820 WP_000876318.1 789997..790968(+) (ceuB) [Staphylococcus aureus strain 17CS1042]
ATGAAGTATTTATTAAAGGGAAATATTTTGCTTCTATTACTAATATTGTTGACAATTATTTCGTTGTTCATAGGTGTGAG
TGAACTATCAATTAAAGATTTACTACATTTAACTGAGTCACAGCGGAATATTTTATTCTCAAGCCGAATACCAAGGACGA
TGAGTATTTTAATTGCTGGAAGTTCGTTGGCTTTAGCAGGCTTGATAATGCAACAAATGATGCAAAATAAGTTTGTTAGT
CCGACTACAGCTGGAACGATGGAATGGGCTAAACTAGGTATTTTAATTGCTTTATTGTTCTTTCCAACCGGTCATATTTT
ATTAAAACTAGTATTTGCTGTTATTTGCAGTATTTGCGGTACGTTTTTATTTGTTAAAATCATTGATTTTATAAAAGTGA
AAGATGTCATTTTTGTACCGCTTCTAGGAATTATGATGGGTGGGATTGTTGCAAGTTTCACAACCTTCATCTCATTGCGC
ACGAATGCTGTTCAAAGCATTGGTAATTGGCTTAACGGGAACTTTGCCATTATCACAAGTGGACGCTATGAAATTTTATA
TTTAAGTATTCCTCTTTTAGCATTGACATATCTTTTTGCTAATCATTTCACGATTGTAGGAATGGGTAAAGACTTTACTA
ATAATTTAGGTTTGAGTTACGAAAAATTAATTAACATCGCATTGTTTATTACTGCAACTATTACAGCATTGGTAGTGGTG
ACTGTTGGAACATTACCGTTCTTAGGTTTAGTTATTCCAAATATTATTTCGATTTATAGAGGTGATCATTTGAAAAATGC
TATCCCTCATACGATGATGTTAGGTGCCATCTTTGTATTATTTTCTGATATAGTTGGCAGAATTGTTGTTTATCCATATG
AAATAAATATTGGTTTAACAATAGGTGTATTTGGAACAATCATTTTCCTTATCTTGCTTATGAAAGGTAGGAAAAATTAT
GCGCAACAATAA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(13-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2XIG1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

47.5

99.071

0.471