Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   SE147_RS11275 Genome accession   NZ_CP138342
Coordinates   2141606..2142574 (-) Length   322 a.a.
NCBI ID   WP_050159090.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain TH1713     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2136606..2147574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE147_RS11250 (SE147_11260) - 2137148..2138455 (-) 1308 WP_048589563.1 YadA-like family protein -
  SE147_RS11255 (SE147_11265) - 2138441..2139094 (+) 654 WP_319078409.1 IS1595 family transposase -
  SE147_RS11260 (SE147_11270) - 2139129..2139887 (-) 759 WP_003687045.1 ABC transporter ATP-binding protein -
  SE147_RS11265 (SE147_11275) - 2139971..2140597 (-) 627 WP_003690385.1 FmdE family protein -
  SE147_RS11270 (SE147_11280) - 2140642..2141616 (-) 975 WP_048339652.1 iron chelate uptake ABC transporter family permease subunit -
  SE147_RS11275 (SE147_11285) ceuB 2141606..2142574 (-) 969 WP_050159090.1 ABC transporter permease Machinery gene
  SE147_RS11280 (SE147_11290) - 2142593..2142784 (-) 192 WP_162098494.1 hypothetical protein -
  SE147_RS11285 (SE147_11295) - 2142802..2143767 (-) 966 WP_010359690.1 siderophore ABC transporter substrate-binding protein -
  SE147_RS11290 (SE147_11300) fetA 2143919..2146060 (-) 2142 WP_003690395.1 TonB-dependent siderophore receptor FetA/FrpB -
  SE147_RS11295 (SE147_11305) - 2146568..2146858 (+) 291 WP_003687059.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 34388.65 Da        Isoelectric Point: 10.5988

>NTDB_id=824898 SE147_RS11275 WP_050159090.1 2141606..2142574(-) (ceuB) [Neisseria gonorrhoeae strain TH1713]
MTAKPFSLNLANLLLPAVLFAVSLSVGVADFRWSDVFSLSDSQQVMFISRLPRTFAIVLTGSSMAVAGMIMQILMRNRFV
EPSMAGAGQSAALGLLLMSLLLPAAPLPVKMSVAAVAALIGMLVFMLLIRRLPPTAQLMVPLVGIIFGGVVEAVATFIAY
KNEMLQMLGVWQQGDFSSVLLGRYELLWITGGLAVFAYLIADRLTILGLGETVSVNLGLNRTAVLWSGLIIVALITSLVI
VTVGNIPFVGLVVPNIVSRLTGDRLRQSLPAVALLGASMVLLCDILGRMIVFPFEIPVSTVFGVLGTALFLWLLLRKPAH
AV

Nucleotide


Download         Length: 969 bp        

>NTDB_id=824898 SE147_RS11275 WP_050159090.1 2141606..2142574(-) (ceuB) [Neisseria gonorrhoeae strain TH1713]
ATGACTGCCAAACCTTTTTCCCTCAACCTGGCCAACCTCCTGCTGCCGGCGGTGTTGTTTGCCGTCAGCCTGTCGGTCGG
CGTTGCCGATTTCCGCTGGTCGGATGTGTTTTCGCTGTCCGACAGCCAACAGGTCATGTTCATCAGCCGCCTGCCGCGCA
CGTTTGCGATTGTGCTGACGGGCTCGTCGATGGCGGTGGCGGGGATGATTATGCAGATTCTGATGCGCAACCGTTTTGTC
GAGCCTTCTATGGCGGGTGCGGGCCAAAGTGCGGCTTTGGGTTTGCTTCTGATGTCCCTGCTGCTGCCTGCCGCGCCGCT
GCCGGTCAAAATGTCGGTTGCCGCCGTTGCCGCGCTGATCGGGATGTTGGTCTTTATGCTGCTGATCCGCCGCCTGCCGC
CGACGGCGCAACTGATGGTGCCGCTGGTGGGGATTATTTTCGGCGGCGTGGTTGAGGCGGTGGCGACGTTTATCGCGTAT
AAAAACGAAATGCTGCAAATGCTCGGCGTGTGGCAGCAGGGCGACTTTTCAAGCGTGCTGCTGGGGCGGTACGAGCTGCT
TTGGATTACGGGCGGTTTGGCGGTGTTTGCCTACCTGATTGCCGACCGGCTGACGATTTTGGGGCTGGGCGAAACGGTGA
GCGTGAATTTGGGTTTGAACCGGACGGCGGTGTTGTGGTCGGGTTTGATTATTGTGGCACTGATTACATCGCTGGTCATT
GTAACGGTCGGCAATATTCCGTTTGTCGGGCTGGTCGTGCCGAATATCGTCAGCCGCCTGACGGGCGACAGGCTGCGCCA
AAGCCTGCCTGCGGTCGCCCTCTTGGGCGCGTCTATGGTGCTGCTGTGCGATATTTTGGGACGCATGATTGTGTTTCCGT
TTGAAATTCCGGTCTCTACGGTTTTTGGTGTGTTGGGTACGGCTTTGTTTTTGTGGCTTTTATTAAGGAAACCTGCCCAT
GCCGTCTGA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(17-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

41.528

93.478

0.388