Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   SE147_RS02345 Genome accession   NZ_CP138342
Coordinates   451126..451737 (+) Length   203 a.a.
NCBI ID   WP_123768185.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain TH1713     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 446126..456737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE147_RS02320 (SE147_02320) - 446607..447188 (-) 582 WP_033910016.1 superoxide dismutase -
  SE147_RS02325 (SE147_02325) dnaB 447352..448758 (+) 1407 WP_123771571.1 replicative DNA helicase -
  SE147_RS02330 (SE147_02330) pilH 448913..449578 (+) 666 WP_319078477.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  SE147_RS02335 (SE147_02335) pilV 449610..450221 (+) 612 WP_250328389.1 type IV pilus modification protein PilV Regulator
  SE147_RS02340 (SE147_02340) pilJ 450218..451147 (+) 930 WP_250328390.1 PilW family protein Machinery gene
  SE147_RS02345 (SE147_02345) pilK 451126..451737 (+) 612 WP_123768185.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  SE147_RS02350 (SE147_02350) pilL 451739..452212 (+) 474 WP_012503482.1 PilX family type IV pilin Machinery gene
  SE147_RS02355 (SE147_02355) - 452282..452590 (-) 309 WP_025456241.1 AzlD family protein -
  SE147_RS02360 (SE147_02360) - 452587..453296 (-) 710 Protein_458 AzlC family ABC transporter permease -
  SE147_RS02365 (SE147_02365) dut 453462..453914 (+) 453 WP_003687923.1 dUTP diphosphatase -
  SE147_RS02370 (SE147_02370) dapC 453992..455179 (+) 1188 WP_123771553.1 succinyldiaminopimelate transaminase -
  SE147_RS02375 (SE147_02375) yaaA 455335..456114 (+) 780 WP_047917077.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22031.95 Da        Isoelectric Point: 8.0862

>NTDB_id=824852 SE147_RS02345 WP_123768185.1 451126..451737(+) (pilK) [Neisseria gonorrhoeae strain TH1713]
MRKQNTLTGIPTSDGQRGSALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYAA
DSKVTFSENCEKGLCTAVNVRTNDNGNEEAFGNIVVQGKPTVEAVKRPCPAKSGKNSTGLCIDNQGVEYKKGTGNVSKMP
RYIIEYLGVKNGQNVYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 612 bp        

>NTDB_id=824852 SE147_RS02345 WP_123768185.1 451126..451737(+) (pilK) [Neisseria gonorrhoeae strain TH1713]
ATGCGCAAACAGAACACTTTGACGGGAATCCCGACTTCTGACGGACAGAGGGGGTCCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAGCAGCGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGCGGGAGGGCGAATTTCAGGTTTTGGATTTGGAATATGCTGCG
GACAGTAAGGTTACGTTTAGCGAAAACTGTGAAAAAGGTCTGTGTACCGCAGTGAATGTGCGGACAAATGATAATGGTAA
TGAAGAGGCTTTTGGTAATATCGTGGTGCAAGGCAAGCCCACCGTTGAGGCGGTGAAGCGTCCTTGCCCTGCAAAGTCTG
GCAAAAATTCTACCGGCCTGTGCATTGACAATCAGGGAGTGGAATATAAGAAAGGTACGGGAAACGTCAGCAAAATGCCG
CGCTATATTATCGAATATTTAGGCGTGAAGAACGGACAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGC
CAATACCGTGGTCGTCCTTCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterProScan.

PilX N-terminal (PilX_N)

(17-67)

Type IV pilus assembly protein PilX C-term (PilX)

(92-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

95.567

100

0.956