Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   SE146_RS12145 Genome accession   NZ_CP138339
Coordinates   2092497..2093063 (-) Length   188 a.a.
NCBI ID   WP_406947582.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain TH2288     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2087497..2098063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE146_RS11015 (SE146_11000) thiC 2087786..2089687 (+) 1902 WP_047918965.1 phosphomethylpyrimidine synthase ThiC -
  SE146_RS11020 (SE146_11005) - 2090176..2090528 (-) 353 Protein_2124 pilin -
  SE146_RS11025 (SE146_11010) - 2090568..2090930 (-) 363 Protein_2125 pilin -
  SE146_RS11030 (SE146_11015) - 2090976..2091317 (-) 342 Protein_2126 pilin -
  SE146_RS11035 (SE146_11020) - 2091357..2091761 (-) 405 Protein_2127 pilin -
  SE146_RS11040 (SE146_11025) - 2092241..2092603 (-) 363 Protein_2128 pilin -
  SE146_RS12145 pilE 2092497..2093063 (-) 567 WP_406947582.1 pilin Machinery gene
  SE146_RS11050 (SE146_11035) - 2093109..2093423 (+) 315 Protein_2130 NAD(P)-dependent oxidoreductase -
  SE146_RS11055 (SE146_11040) metG 2093498..2095552 (-) 2055 WP_050169372.1 methionine--tRNA ligase -
  SE146_RS11060 (SE146_11045) glmS 2095668..2097506 (-) 1839 WP_003691965.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 21110.17 Da        Isoelectric Point: 10.5661

>NTDB_id=824831 SE146_RS12145 WP_406947582.1 2092497..2093063(-) (pilE) [Neisseria gonorrhoeae strain TH2288]
MASASTIKGKYVQKVEVAKGVVTAQMASTGVNKEIKNKKLSLWARREAGSVKWFCGQPVTRDKAVTDDAVKDVTGNDKIE
TKHLPSTCRCFQIGSVKWFCGQPVTRDNAGTDAVTADTTGKDKEIDTKHLPSTCRDESSAGCIETPRADFKHFQKISRYR
VLPESRRMARKQRRCRRGIRFNNQRQIC

Nucleotide


Download         Length: 567 bp        

>NTDB_id=824831 SE146_RS12145 WP_406947582.1 2092497..2093063(-) (pilE) [Neisseria gonorrhoeae strain TH2288]
GTGGCATCCGCTTCAACAATCAAAGGCAAATATGTTCAGAAAGTTGAAGTCGCAAAAGGCGTCGTCACCGCCCAAATGGC
TTCAACCGGCGTAAACAAAGAAATCAAAAACAAAAAACTCTCCCTGTGGGCCAGGCGTGAAGCCGGTTCGGTAAAATGGT
TCTGCGGACAGCCGGTTACGCGCGACAAAGCCGTCACCGACGACGCCGTCAAAGACGTCACCGGCAACGACAAAATCGAA
ACCAAGCACCTGCCGTCAACCTGCCGTTGCTTTCAAATCGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTACGCGCGA
CAACGCCGGCACCGACGCCGTCACCGCCGACACCACCGGCAAAGACAAAGAAATCGACACCAAGCACCTGCCGTCAACCT
GCCGCGATGAATCATCTGCCGGTTGCATAGAAACACCACGCGCCGATTTCAAACACTTCCAAAAAATCAGCCGTTACCGA
GTATTACCTGAATCACGGCGAATGGCCCGCAAACAACGGCGCTGCCGGCGTGGCATCCGCTTCAACAATCAAAGGCAAAT
ATGTTAA

Domains

Predicted by InterProScan.

Pilin (bacterial filament) (Pilin)

(2-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

78.652

47.34

0.372