Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   QJR30_RS03810 Genome accession   NZ_CP124295
Coordinates   776815..777768 (+) Length   317 a.a.
NCBI ID   WP_055338619.1    Uniprot ID   -
Organism   Paraclostridium sordellii strain C116     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 771815..782768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJR30_RS03785 (QJR30_03780) - 772493..773230 (+) 738 WP_055338616.1 LytTR family DNA-binding domain-containing protein -
  QJR30_RS03790 (QJR30_03785) - 773383..773586 (+) 204 WP_261291086.1 hypothetical protein -
  QJR30_RS03795 (QJR30_03790) - 773617..774723 (+) 1107 Protein_718 PTS transporter subunit EIIC -
  QJR30_RS03800 (QJR30_03795) - 774725..775477 (+) 753 WP_055338617.1 MurR/RpiR family transcriptional regulator -
  QJR30_RS03805 (QJR30_03800) - 775480..776667 (+) 1188 WP_055338618.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme -
  QJR30_RS03810 (QJR30_03805) ceuB 776815..777768 (+) 954 WP_055338619.1 ABC transporter permease Machinery gene
  QJR30_RS03815 (QJR30_03810) - 777758..778750 (+) 993 WP_055338620.1 iron chelate uptake ABC transporter family permease subunit -
  QJR30_RS03820 (QJR30_03815) - 778750..779505 (+) 756 WP_055338621.1 ATP-binding cassette domain-containing protein -
  QJR30_RS03825 (QJR30_03820) - 779561..780520 (+) 960 WP_055338622.1 ABC transporter substrate-binding protein -
  QJR30_RS03830 (QJR30_03825) - 780648..782348 (+) 1701 WP_055338623.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34922.12 Da        Isoelectric Point: 10.0528

>NTDB_id=824822 QJR30_RS03810 WP_055338619.1 776815..777768(+) (ceuB) [Paraclostridium sordellii strain C116]
MKKRYLLILLIALSFISLFVGVNDIKLIDLINYNQEKIDVFLISRVPRLISILVAGIGMSICGLIMQQISRNKFVSPTTG
STIDSAQLGLIFAILILPKSGILGKTIISFIFALAGTFTFMNILKKLKFKNAVFVPLVGIMFGNIIGSATTFIGYKYNLM
QDITSWMQGNFSMVLKGNYEMMYITIPLIVIAYLYANKFTIAGMGEDFATNLGLDYKKVLNTGLIIVSIVTASVVITIGS
IPFIGLIVPNIVSIYKGDNLKDTIWHTGLFGAIFVLICDIFSRLVIYPYEIPIGLTVGVLGSGIFLSMILRRKSYAS

Nucleotide


Download         Length: 954 bp        

>NTDB_id=824822 QJR30_RS03810 WP_055338619.1 776815..777768(+) (ceuB) [Paraclostridium sordellii strain C116]
ATGAAGAAAAGGTATTTATTAATTTTGTTGATAGCTCTATCATTTATATCTTTATTTGTAGGTGTAAACGACATAAAGCT
GATAGATTTAATAAATTATAACCAAGAAAAAATTGATGTGTTTTTAATAAGTAGAGTACCTAGGTTAATAAGTATATTGG
TTGCAGGAATTGGAATGAGTATATGTGGGCTTATAATGCAACAAATAAGTAGAAATAAGTTTGTATCTCCTACTACTGGA
TCTACAATAGATTCTGCTCAACTTGGATTGATATTTGCTATATTGATTTTACCAAAATCAGGTATATTAGGCAAAACTAT
TATTTCATTTATTTTTGCATTAGCAGGAACTTTTACATTTATGAATATATTAAAAAAACTAAAATTTAAAAATGCAGTAT
TTGTACCTTTAGTTGGAATTATGTTTGGAAATATAATAGGTTCAGCTACAACTTTTATAGGATATAAATATAATCTTATG
CAAGATATAACATCTTGGATGCAAGGGAATTTTTCCATGGTACTTAAAGGAAATTATGAGATGATGTATATAACCATTCC
TCTTATAGTAATTGCATATCTTTATGCTAATAAATTTACTATAGCTGGTATGGGAGAGGATTTTGCAACAAATTTAGGAC
TTGATTATAAAAAAGTTTTAAATACAGGACTAATTATAGTATCTATAGTTACAGCAAGTGTTGTTATAACTATAGGGAGC
ATACCATTTATCGGACTTATAGTTCCAAATATAGTTTCTATTTATAAAGGAGATAACTTAAAAGATACTATATGGCATAC
AGGATTATTTGGGGCTATATTTGTTTTAATTTGTGATATATTTTCAAGGTTAGTTATATACCCATATGAGATACCAATAG
GGCTTACTGTAGGGGTTTTAGGAAGCGGAATTTTCCTTAGTATGATATTAAGGAGGAAGTCATATGCAAGCTAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

48.882

98.738

0.483