Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   M2Y57_RS07165 Genome accession   NZ_AP023345
Coordinates   1514369..1514650 (-) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain JSHR31     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1509369..1519650
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2Y57_RS07145 (JSHR31_14210) - 1510060..1511400 (-) 1341 WP_248425939.1 COG3014 family protein -
  M2Y57_RS07155 (JSHR31_14220) comB4 1511741..1514104 (-) 2364 WP_248425941.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  M2Y57_RS07160 (JSHR31_14230) comB3 1514106..1514369 (-) 264 WP_021308243.1 hypothetical protein Machinery gene
  M2Y57_RS07165 (JSHR31_14240) comB2 1514369..1514650 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  M2Y57_RS07170 (JSHR31_14250) - 1514795..1515622 (-) 828 WP_248425943.1 DUF5718 family protein -
  M2Y57_RS07175 (JSHR31_14260) - 1515711..1516763 (-) 1053 WP_248425946.1 MnmA/TRMU family protein -
  M2Y57_RS07180 (JSHR31_14270) dnaG 1516760..1518439 (-) 1680 WP_248425947.1 DNA primase -
  M2Y57_RS07185 (JSHR31_14280) groES 1518714..1519070 (+) 357 WP_000671946.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=82482 M2Y57_RS07165 WP_001272686.1 1514369..1514650(-) (comB2) [Helicobacter pylori strain JSHR31]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=82482 M2Y57_RS07165 WP_001272686.1 1514369..1514650(-) (comB2) [Helicobacter pylori strain JSHR31]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGCTTGTTCGCTGAAGGTTTAGAAGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCTCCGAGTTTAGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989

Multiple sequence alignment