Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD/cglD   Type   Machinery gene
Locus tag   R8625_RS09590 Genome accession   NZ_AP026923
Coordinates   1847983..1848417 (-) Length   144 a.a.
NCBI ID   WP_000608686.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700054     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1842983..1853417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8625_RS09550 (PC0054_18580) rnpA 1843398..1843769 (-) 372 WP_000739246.1 ribonuclease P protein component -
  R8625_RS09555 - 1843786..1843917 (-) 132 WP_000768904.1 hypothetical protein -
  R8625_RS09560 (PC0054_18590) - 1843918..1845108 (-) 1191 WP_000167769.1 acetate kinase -
  R8625_RS09565 (PC0054_18600) comGH 1845159..1846112 (-) 954 WP_317649157.1 class I SAM-dependent methyltransferase Machinery gene
  R8625_RS09570 - 1846173..1846767 (-) 595 Protein_1857 class I SAM-dependent methyltransferase -
  R8625_RS09575 (PC0054_18630) comGG/cglG 1846870..1847316 (-) 447 WP_001811371.1 competence type IV pilus minor pilin ComGG Machinery gene
  R8625_RS09580 (PC0054_18640) comGF/cglF 1847294..1847755 (-) 462 WP_000250523.1 competence type IV pilus minor pilin ComGF Machinery gene
  R8625_RS09585 (PC0054_18650) comGE/cglE 1847718..1848020 (-) 303 WP_317649158.1 competence type IV pilus minor pilin ComGE Machinery gene
  R8625_RS09590 (PC0054_18660) comGD/cglD 1847983..1848417 (-) 435 WP_000608686.1 competence type IV pilus minor pilin ComGD Machinery gene
  R8625_RS09595 (PC0054_18670) comGC/cglC 1848380..1848643 (-) 264 WP_000962025.1 competence type IV pilus major pilin ComGC Machinery gene
  R8625_RS09600 (PC0054_18680) - 1848645..1848902 (-) 258 WP_000698511.1 hypothetical protein -
  R8625_RS09605 (PC0054_18690) - 1849173..1850129 (-) 957 WP_219601358.1 N-acetylmuramoyl-L-alanine amidase family protein -
  R8625_RS09610 (PC0054_18700) - 1850133..1850465 (-) 333 WP_050085269.1 phage holin -
  R8625_RS09615 (PC0054_18710) - 1850469..1850768 (-) 300 WP_001811580.1 hypothetical protein -
  R8625_RS09620 (PC0054_18720) - 1850777..1851127 (-) 351 WP_000852245.1 hypothetical protein -
  R8625_RS09625 (PC0054_18730) - 1851130..1851333 (-) 204 WP_001091109.1 hypothetical protein -
  R8625_RS09630 - 1851314..1851430 (-) 117 WP_001063633.1 hypothetical protein -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15786.23 Da        Isoelectric Point: 10.3971

>NTDB_id=82482 R8625_RS09590 WP_000608686.1 1847983..1848417(-) (comGD/cglD) [Streptococcus pneumoniae strain PZ900700054]
MINKILVKSLKIKAFTILESLLVLGLVSILALGLSGSVQSTFAAVEEQIFFMEFEELYRETQKRSVASQQKTSLNSDGQT
ISNGSQKLPVPKGIQAPSDQSITFDRAGGNSSLAKVEFQTSKGAIRYQLYLGNGKIKRIKETKN

Nucleotide


Download         Length: 435 bp        

>NTDB_id=82482 R8625_RS09590 WP_000608686.1 1847983..1848417(-) (comGD/cglD) [Streptococcus pneumoniae strain PZ900700054]
ATGATAAACAAAATACTAGTCAAATCGTTAAAGATTAAGGCCTTTACCATACTTGAAAGTCTCTTGGTTTTGGGTCTTGT
GAGTATCCTTGCCCTGGGCTTGTCCGGCTCTGTTCAGTCCACTTTTGCGGCGGTAGAGGAACAGATTTTCTTTATGGAGT
TTGAAGAACTCTATAGGGAAACCCAAAAACGCAGTGTAGCCAGTCAGCAAAAGACTAGTCTGAACTCAGATGGGCAGACG
ATTAGCAATGGCAGTCAAAAGTTGCCAGTCCCTAAAGGAATTCAGGCCCCATCAGATCAAAGTATTACATTTGACCGTGC
TGGGGGCAATTCGTCCCTGGCTAAGGTTGAATTTCAGACCAGTAAAGGAGCGATTCGCTATCAATTATATCTAGGAAATG
GAAAAATTAAACGCATTAAGGAAACAAAAAATTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD/cglD Streptococcus mitis NCTC 12261

93.056

100

0.931
  comGD/cglD Streptococcus pneumoniae TIGR4

96.241

92.361

0.889
  comGD/cglD Streptococcus pneumoniae Rx1

95.489

92.361

0.882
  comGD/cglD Streptococcus pneumoniae D39

95.489

92.361

0.882
  comGD/cglD Streptococcus pneumoniae R6

95.489

92.361

0.882
  comGD/cglD Streptococcus mitis SK321

94.737

92.361

0.875
  comGD Streptococcus gordonii str. Challis substr. CH1

56.835

96.528

0.549
  comGD Streptococcus mutans UA140

48.837

89.583

0.437
  comGD Streptococcus mutans UA159

48.837

89.583

0.437

Multiple sequence alignment