Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | M2Y57_RS07160 | Genome accession | NZ_AP023345 |
| Coordinates | 1514106..1514369 (-) | Length | 87 a.a. |
| NCBI ID | WP_021308243.1 | Uniprot ID | A0A0K9MPK4 |
| Organism | Helicobacter pylori strain JSHR31 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1509106..1519369
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M2Y57_RS07145 (JSHR31_14210) | - | 1510060..1511400 (-) | 1341 | WP_248425939.1 | COG3014 family protein | - |
| M2Y57_RS07155 (JSHR31_14220) | comB4 | 1511741..1514104 (-) | 2364 | WP_248425941.1 | VirB4 family type IV secretion/conjugal transfer ATPase | Machinery gene |
| M2Y57_RS07160 (JSHR31_14230) | comB3 | 1514106..1514369 (-) | 264 | WP_021308243.1 | hypothetical protein | Machinery gene |
| M2Y57_RS07165 (JSHR31_14240) | comB2 | 1514369..1514650 (-) | 282 | WP_001272686.1 | TrbC/VirB2 family protein | Machinery gene |
| M2Y57_RS07170 (JSHR31_14250) | - | 1514795..1515622 (-) | 828 | WP_248425943.1 | DUF5718 family protein | - |
| M2Y57_RS07175 (JSHR31_14260) | - | 1515711..1516763 (-) | 1053 | WP_248425946.1 | MnmA/TRMU family protein | - |
| M2Y57_RS07180 (JSHR31_14270) | dnaG | 1516760..1518439 (-) | 1680 | WP_248425947.1 | DNA primase | - |
| M2Y57_RS07185 (JSHR31_14280) | groES | 1518714..1519070 (+) | 357 | WP_000671946.1 | co-chaperone GroES | - |
Sequence
Protein
Download Length: 87 a.a. Molecular weight: 10048.16 Da Isoelectric Point: 9.5290
>NTDB_id=82481 M2Y57_RS07160 WP_021308243.1 1514106..1514369(-) (comB3) [Helicobacter pylori strain JSHR31]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLVLFSVLEFFDEDIADIIIAKSKIKT
KTKCYRA
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLVLFSVLEFFDEDIADIIIAKSKIKT
KTKCYRA
Nucleotide
Download Length: 264 bp
>NTDB_id=82481 M2Y57_RS07160 WP_021308243.1 1514106..1514369(-) (comB3) [Helicobacter pylori strain JSHR31]
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGCGCCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGTGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCTAAAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGCGCCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGTGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCTAAAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
97.701 |
100 |
0.977 |