Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   QJR60_RS13210 Genome accession   NZ_CP124285
Coordinates   2654675..2655628 (-) Length   317 a.a.
NCBI ID   WP_055329584.1    Uniprot ID   A0A9P1P8D8
Organism   Paraclostridium sordellii strain C128     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2649675..2660628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJR60_RS13190 (QJR60_13170) - 2650095..2651795 (-) 1701 WP_338559471.1 ABC transporter ATP-binding protein -
  QJR60_RS13195 (QJR60_13175) - 2651923..2652882 (-) 960 WP_057540952.1 ABC transporter substrate-binding protein -
  QJR60_RS13200 (QJR60_13180) - 2652938..2653693 (-) 756 WP_057563914.1 ABC transporter ATP-binding protein -
  QJR60_RS13205 (QJR60_13185) - 2653693..2654685 (-) 993 WP_057563913.1 iron chelate uptake ABC transporter family permease subunit -
  QJR60_RS13210 (QJR60_13190) ceuB 2654675..2655628 (-) 954 WP_055329584.1 ABC transporter permease Machinery gene
  QJR60_RS13215 (QJR60_13195) - 2655776..2656963 (-) 1188 WP_057563912.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme -
  QJR60_RS13220 (QJR60_13200) - 2656966..2657718 (-) 753 WP_055329587.1 MurR/RpiR family transcriptional regulator -
  QJR60_RS13225 (QJR60_13205) - 2657720..2659060 (-) 1341 WP_054631448.1 PTS sugar transporter subunit IIC -
  QJR60_RS13230 (QJR60_13210) - 2659213..2659950 (-) 738 WP_156987553.1 LytTR family DNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34884.00 Da        Isoelectric Point: 9.9859

>NTDB_id=824806 QJR60_RS13210 WP_055329584.1 2654675..2655628(-) (ceuB) [Paraclostridium sordellii strain C128]
MKKRYLLILLIALSFISLFVGVNDIKLIDLINYNQEKIDVFLISRVPRLISILVAGIGMSICGLIMQQISRNKFVSPTTG
STIDSAQLGLVFAMLVLPNSGILGKTIISFVFALAGTFTFMNILKKLKFKNAVFVPLVGIMFGNIIGSATTFIGYKYNLM
QDITSWMQGNFSMVLKGNYEMMYITIPLIVIAYLYANKFTIAGMGEDFATNLGLDYKKVLNTGLIIVSIVTASVVITIGS
IPFIGLIVPNIVSIYKGDNLKDTIWHTGLFGAIFVLICDIFSRLVIYPYEIPIGLTVGVLGSGIFLSMILRRKSYAS

Nucleotide


Download         Length: 954 bp        

>NTDB_id=824806 QJR60_RS13210 WP_055329584.1 2654675..2655628(-) (ceuB) [Paraclostridium sordellii strain C128]
ATGAAGAAAAGGTACTTATTAATTTTGTTAATAGCTCTATCATTTATATCTTTATTTGTAGGTGTAAACGACATAAAGCT
GATAGATTTAATAAATTATAACCAAGAAAAAATTGATGTGTTTTTAATAAGTAGGGTACCTAGGTTAATAAGTATACTGG
TTGCAGGAATTGGAATGAGTATATGTGGGCTTATAATGCAGCAAATAAGTAGAAATAAGTTTGTATCTCCTACTACTGGA
TCTACAATAGATTCTGCTCAACTTGGATTGGTATTTGCTATGTTAGTTTTACCAAACTCAGGGATATTAGGCAAAACTAT
TATTTCATTTGTTTTTGCATTAGCAGGAACTTTTACATTTATGAATATATTAAAAAAACTAAAATTTAAAAATGCAGTAT
TTGTACCTTTAGTTGGAATTATGTTTGGAAATATAATAGGTTCAGCTACAACTTTTATAGGATATAAATATAATCTTATG
CAAGATATAACATCTTGGATGCAAGGAAATTTTTCCATGGTACTTAAAGGAAATTATGAGATGATGTATATAACTATTCC
TCTTATAGTAATTGCATATCTTTATGCTAATAAATTTACTATAGCTGGTATGGGAGAGGATTTTGCAACAAATTTAGGAC
TTGATTATAAAAAAGTTTTAAATACAGGACTAATTATAGTATCTATAGTTACAGCAAGTGTTGTTATAACTATAGGGAGC
ATACCATTTATCGGGCTTATAGTTCCAAATATAGTTTCTATTTATAAAGGAGATAACTTAAAAGATACTATATGGCACAC
AGGATTATTTGGGGCTATATTTGTTTTAATTTGCGATATATTTTCAAGGTTAGTTATATACCCATATGAGATACCAATAG
GGCTTACTGTAGGGGTTTTAGGAAGCGGAATTTTCCTTAGTATGATATTAAGGAGGAAGTCATATGCAAGCTAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

49.201

98.738

0.486