Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   M2Y57_RS07030 Genome accession   NZ_AP023345
Coordinates   1481471..1482784 (-) Length   437 a.a.
NCBI ID   WP_248425915.1    Uniprot ID   -
Organism   Helicobacter pylori strain JSHR31     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1476471..1487784
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2Y57_RS07000 (JSHR31_13910) nadC 1476934..1477755 (-) 822 WP_248425912.1 carboxylating nicotinate-nucleotide diphosphorylase -
  M2Y57_RS07005 (JSHR31_13920) nadA 1477755..1478765 (-) 1011 WP_075653467.1 quinolinate synthase NadA -
  M2Y57_RS07010 (JSHR31_13930) - 1478752..1479558 (-) 807 WP_000561116.1 phosphatidylserine decarboxylase -
  M2Y57_RS07015 (JSHR31_13940) - 1479555..1480058 (-) 504 WP_000953083.1 DUF6115 domain-containing protein -
  M2Y57_RS07020 (JSHR31_13950) - 1480071..1480565 (-) 495 WP_000544981.1 hypothetical protein -
  M2Y57_RS07025 (JSHR31_13960) mqnP 1480558..1481442 (-) 885 WP_248425913.1 menaquinone biosynthesis prenyltransferase MqnP -
  M2Y57_RS07030 (JSHR31_13970) comEC/comE3 1481471..1482784 (-) 1314 WP_248425915.1 ComEC/Rec2 family competence protein Machinery gene
  M2Y57_RS07035 (JSHR31_13980) - 1482781..1484247 (-) 1467 WP_248425916.1 replicative DNA helicase -
  M2Y57_RS07040 (JSHR31_13990) - 1484258..1485652 (-) 1395 WP_248425917.1 NAD(P)H-hydrate dehydratase -
  M2Y57_RS07045 (JSHR31_14000) crdS 1485655..1486857 (-) 1203 WP_248426529.1 HAMP domain-containing sensor histidine kinase -
  M2Y57_RS07050 (JSHR31_14010) crdR 1486823..1487464 (-) 642 WP_248425919.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50194.09 Da        Isoelectric Point: 9.8572

>NTDB_id=82478 M2Y57_RS07030 WP_248425915.1 1481471..1482784(-) (comEC/comE3) [Helicobacter pylori strain JSHR31]
MKDKTFQGAFELLTTSKEYLLCGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYATIKEPLKNLQYRHAQFFGKIKPCSFLESLRSCFFQTYSFSLTRKQDFKSHWRHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLTLACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQVFFKTSSFLVRSFQVISLS
ALVFLNMLIIVHAFFSMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDSILNMPLTIPTISVFSPLWLLGAHLFLT
ILSVRFFKVYLSMNVLSTGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=82478 M2Y57_RS07030 WP_248425915.1 1481471..1482784(-) (comEC/comE3) [Helicobacter pylori strain JSHR31]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCTCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCGCTCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCCAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATGCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCACGCGCAATTTTTTGGAAAAATCAAACCTTGCTC
GTTTTTGGAGTCTTTAAGATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGAAAACAAGATTTCAAATCGCATT
GGCGCCATTTCATTGACAGCGCTCATTCAAGCGCTTTAGTGGGTAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGTTAGGGATCAACCACTTACTAGCCATTAGCGGATTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAGCTTTTGACTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAGTCTTTTTTAAAACTTCTTCTTTTTTGGTGCGATCTTTTCAGGTCATAAGCTTAAGC
GCGCTAGTGTTTTTGAACATGCTCATCATTGTGCATGCCTTTTTCTCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTTTTGCATGCTGTGGGTTTGGGGTCTTTGCTGGATAGCA
TTTTAAACATGCCTTTAACAATCCCTACGATTTCGGTTTTTTCGCCTTTATGGCTTTTAGGGGCGCATTTATTTTTAACG
ATTCTAAGCGTGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCACGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGCTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.508

100

0.945

Multiple sequence alignment