Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   SD209_RS29525 Genome accession   NZ_CP138326
Coordinates   6218709..6219074 (+) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain JBPA     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6213709..6224074
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD209_RS29495 (SD209_29495) pyrR 6214331..6214843 (-) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  SD209_RS29500 (SD209_29500) ruvX 6214955..6215389 (-) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  SD209_RS29505 (SD209_29505) - 6215389..6215958 (-) 570 WP_003100947.1 YqgE/AlgH family protein -
  SD209_RS29510 (SD209_29510) - 6216007..6216900 (-) 894 WP_003162015.1 energy transducer TonB -
  SD209_RS29515 (SD209_29515) gshB 6217047..6218000 (-) 954 WP_003100943.1 glutathione synthase -
  SD209_RS29520 (SD209_29520) pilG 6218255..6218662 (+) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  SD209_RS29525 (SD209_29525) pilH 6218709..6219074 (+) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  SD209_RS29530 (SD209_29530) - 6219125..6219661 (+) 537 WP_003084590.1 chemotaxis protein CheW -
  SD209_RS29535 (SD209_29535) pilJ 6219746..6221794 (+) 2049 WP_003100940.1 chemotaxis chemoreceptor PilJ -
  SD209_RS29540 (SD209_29540) pilK 6221855..6222730 (+) 876 WP_023086908.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=824746 SD209_RS29525 WP_003084587.1 6218709..6219074(+) (pilH) [Pseudomonas aeruginosa strain JBPA]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=824746 SD209_RS29525 WP_003084587.1 6218709..6219074(+) (pilH) [Pseudomonas aeruginosa strain JBPA]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364