Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   M2Y57_RS05395 Genome accession   NZ_AP023345
Coordinates   1136120..1136524 (-) Length   134 a.a.
NCBI ID   WP_154568961.1    Uniprot ID   -
Organism   Helicobacter pylori strain JSHR31     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1131120..1141524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2Y57_RS05360 (JSHR31_10510) - 1131247..1132374 (-) 1128 WP_248425688.1 hypothetical protein -
  M2Y57_RS05365 - 1132364..1133149 (-) 786 WP_248425689.1 hypothetical protein -
  M2Y57_RS05370 - 1133149..1133535 (-) 387 WP_248425690.1 DUF1294 domain-containing protein -
  M2Y57_RS05375 (JSHR31_10530) - 1133865..1134290 (-) 426 WP_248425691.1 hypothetical protein -
  M2Y57_RS05380 (JSHR31_10540) - 1134551..1135111 (-) 561 WP_248425693.1 hypothetical protein -
  M2Y57_RS05385 (JSHR31_10550) - 1135095..1135433 (-) 339 WP_000699916.1 hypothetical protein -
  M2Y57_RS05390 (JSHR31_10560) - 1135622..1135951 (-) 330 WP_282568875.1 tetratricopeptide repeat protein -
  M2Y57_RS05395 (JSHR31_10570) dprB 1136120..1136524 (-) 405 WP_154568961.1 Holliday junction resolvase RuvX Machinery gene
  M2Y57_RS05400 (JSHR31_10580) dprA 1136521..1137321 (-) 801 WP_131127863.1 DNA-processing protein DprA Machinery gene
  M2Y57_RS05405 (JSHR31_10590) minE 1137333..1137566 (-) 234 WP_000051412.1 cell division topological specificity factor MinE -
  M2Y57_RS05410 (JSHR31_10600) minD 1137563..1138369 (-) 807 WP_001019098.1 septum site-determining protein MinD -
  M2Y57_RS05415 (JSHR31_10610) ilvC 1138394..1139386 (-) 993 WP_248425694.1 ketol-acid reductoisomerase -
  M2Y57_RS05425 (JSHR31_10620) - 1139635..1140417 (+) 783 WP_248425695.1 NAD+ synthase -
  M2Y57_RS05430 (JSHR31_10630) - 1140414..1141352 (+) 939 WP_248425696.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15386.88 Da        Isoelectric Point: 9.0343

>NTDB_id=82474 M2Y57_RS05395 WP_154568961.1 1136120..1136524(-) (dprB) [Helicobacter pylori strain JSHR31]
MILACDVGLKRIGIAMLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLLDFKGE
IVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILERYYQQVLKDR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=82474 M2Y57_RS05395 WP_154568961.1 1136120..1136524(-) (dprB) [Helicobacter pylori strain JSHR31]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTATGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTGCGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTAGTGG
TGGGCAAGCCCAACGAAAGCTATGCGGACACGAACGCACGCATTGAGCATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATCAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGAATCTTGGAGCGCTATTATCAGCAGGTTTTGAAAGATC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

95.489

99.254

0.948

Multiple sequence alignment