Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   SD209_RS18980 Genome accession   NZ_CP138326
Coordinates   3969126..3970340 (-) Length   404 a.a.
NCBI ID   WP_022579875.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain JBPA     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3964126..3975340
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD209_RS18970 (SD209_18970) - 3966308..3967420 (-) 1113 WP_003112720.1 substrate-binding domain-containing protein -
  SD209_RS18975 (SD209_18975) lapA 3967506..3968612 (-) 1107 WP_003112123.1 alkaline phosphatase LapA -
  SD209_RS18980 (SD209_18980) pilC 3969126..3970340 (-) 1215 WP_022579875.1 type II secretion system inner membrane protein GspF Machinery gene
  SD209_RS18985 (SD209_18985) pilB 3970340..3971749 (-) 1410 WP_003112722.1 type II secretion system ATPase GspE Machinery gene
  SD209_RS18990 (SD209_18990) gspD 3971746..3974157 (-) 2412 WP_023087777.1 type II secretion system secretin GspD -
  SD209_RS18995 (SD209_18995) - 3974154..3974747 (-) 594 WP_003123065.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 404 a.a.        Molecular weight: 43349.37 Da        Isoelectric Point: 9.3769

>NTDB_id=824697 SD209_RS18980 WP_022579875.1 3969126..3970340(-) (pilC) [Pseudomonas aeruginosa strain JBPA]
MQTFRYEAADAQGRIETGTLEADSQRGALGQLRARGLTPLEVREQAGGGAGQGAGALFAPRLSDGDLAWATRQLASLLAA
SLPLEAALSATLDQAERKHIAQTLSAVRSDVRGGMRLADALAARPRDFPEIYRALVAAGEESGDLAQVMERLADYIEERN
ALRGKILTAFIYPAVVGVVSIGIVIFLLGYVVPQVVSAFSQARQDLPALTRAMLQASDFVRAWGWLCAGAIGGAYWGWRL
YLRDPQARLGWHRRVLRLPLLGRFVLGVNTARFASTLAILGSAGVPLLRALDAARQTLANDCLAQAVEEATAQVREGVSL
ASALRTRQVFPPILTHLIASGEKTGALPPMLDRAAQTLSRDIERRAMGMTALLEPLMIVVMGGVVLTIVMAVLMPIIEMN
QLVQ

Nucleotide


Download         Length: 1215 bp        

>NTDB_id=824697 SD209_RS18980 WP_022579875.1 3969126..3970340(-) (pilC) [Pseudomonas aeruginosa strain JBPA]
ATGCAGACCTTCCGCTACGAAGCCGCCGACGCCCAGGGCCGGATCGAGACCGGCACCCTGGAGGCGGACAGCCAGCGTGG
CGCCCTCGGCCAACTGCGCGCCCGCGGCCTGACTCCGCTGGAGGTCCGCGAGCAGGCCGGCGGCGGGGCCGGGCAAGGGG
CGGGCGCGCTGTTCGCCCCGCGCCTGTCCGACGGCGACCTGGCCTGGGCCACCCGCCAGCTGGCCAGCCTGCTGGCCGCC
AGCCTGCCGCTGGAGGCGGCGCTGAGCGCCACCCTCGACCAGGCCGAGCGCAAGCACATCGCCCAGACCCTGAGCGCCGT
GCGCAGCGACGTGCGCGGCGGCATGCGCCTGGCCGACGCCCTTGCCGCACGGCCGCGGGACTTCCCGGAAATCTACCGGG
CGCTGGTGGCGGCGGGCGAGGAGTCCGGCGACCTGGCCCAGGTGATGGAGCGCCTGGCCGACTACATCGAGGAACGCAAC
GCCCTGCGCGGCAAGATCCTCACCGCGTTCATCTACCCGGCGGTGGTCGGCGTGGTCTCCATCGGCATCGTCATCTTCCT
CCTCGGCTACGTGGTGCCGCAGGTGGTCAGCGCCTTCTCCCAGGCGCGCCAGGACCTGCCGGCGCTGACCCGGGCGATGC
TCCAGGCCAGCGACTTCGTGCGCGCCTGGGGCTGGCTCTGCGCCGGCGCCATCGGTGGCGCTTACTGGGGCTGGCGCTTG
TACCTGCGCGACCCGCAGGCGCGGCTCGGCTGGCACCGGCGAGTGCTGCGCCTGCCTCTGCTCGGACGCTTCGTGCTCGG
GGTGAATACCGCGCGCTTCGCCTCCACCCTGGCGATCCTCGGCAGCGCCGGCGTACCGCTGCTGCGCGCGCTCGATGCGG
CGCGCCAGACGCTGGCCAACGACTGCCTCGCGCAGGCGGTGGAGGAGGCCACCGCGCAGGTTCGCGAAGGTGTCTCGCTG
GCCTCGGCGCTGCGCACGCGGCAGGTGTTCCCGCCGATCCTCACCCACCTGATCGCCAGCGGCGAGAAGACCGGTGCGCT
GCCGCCGATGCTCGACCGCGCGGCGCAGACCTTGTCGCGCGACATCGAGCGCCGCGCCATGGGCATGACCGCGTTGCTCG
AGCCGCTGATGATCGTGGTCATGGGCGGGGTGGTGCTGACCATCGTGATGGCGGTGCTGATGCCGATCATCGAGATGAAC
CAACTGGTCCAGTAG

Domains

Predicted by InterProScan.

Type II secretion system (T2SS), protein F (T2SSF)

(273-395)

Type II secretion system (T2SS), protein F (T2SSF)

(71-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Thermus thermophilus HB27

36.386

100

0.364