Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   M2Y57_RS00010 Genome accession   NZ_AP023345
Coordinates   1689..3128 (+) Length   479 a.a.
NCBI ID   WP_248426011.1    Uniprot ID   -
Organism   Helicobacter pylori strain JSHR31     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2Y57_RS00005 (JSHR31_00010) dnaA 101..1468 (+) 1368 WP_248426009.1 chromosomal replication initiator protein DnaA -
  M2Y57_RS00010 (JSHR31_00020) comH 1689..3128 (+) 1440 WP_248426011.1 competence protein Machinery gene
  M2Y57_RS00020 (JSHR31_00030) - 3306..4058 (+) 753 WP_248426013.1 exodeoxyribonuclease III -
  M2Y57_RS00025 (JSHR31_00040) - 4055..4690 (-) 636 WP_000668030.1 outer membrane protein -
  M2Y57_RS00030 (JSHR31_00050) - 4694..5047 (-) 354 WP_000837005.1 hypothetical protein -
  M2Y57_RS00035 (JSHR31_00060) recG 5129..6994 (+) 1866 WP_248426015.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 54870.76 Da        Isoelectric Point: 7.4337

>NTDB_id=82463 M2Y57_RS00010 WP_248426011.1 1689..3128(+) (comH) [Helicobacter pylori strain JSHR31]
MKKTLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPLDE
KLSLETILNPNRPTIPRNTQIVFSSKELKEPHPHQMPSLNAPIQKPQNKPTSSQQSSQNFSYSESKLGSKNPKNSLLQPL
ATPSKISSTNEVKTPTNDTKPPLKHSSEDQENNLFVTPPTEKTLPNNTPNANINEHNESNENRDSVEKQAIRDPNVKEFA
CGKWVYDDENLQAYRPSILKRVDEDKQTATDITPCDYSNAENKSGKITTPYTKISVHKTEPLEEPQTFEAKNNFTILQAR
SSTEKCKRARARKDGTTRQCYLIEEPLKQAWESEYQITTQLVKAVYERPKQDDQTEPTFYETNELAYSSTRKSEVKQNEL
NLNDKFMEFVEVYEGHYLNDIIKESSEYKEWVKNHVRFKEGVCMVLEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=82463 M2Y57_RS00010 WP_248426011.1 1689..3128(+) (comH) [Helicobacter pylori strain JSHR31]
ATGAAAAAAACCCTTTGTCTGTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCCCTTGTGATCGAGCTTTTAGAAGA
AATCAAAACTTCGCCGCATAAAGGCACTTTTAAAGCTAAAGTCCTTGATTCTAAAGAACCAAGACAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACTATCACCCACATATCCACTGCAATTGTCTATCAACCCCTTGATGAA
AAACTTTCTTTAGAAACGATCTTAAACCCTAACCGCCCTACTATTCCCAGAAACACCCAAATTGTTTTTTCTTCAAAAGA
GTTGAAAGAGCCACACCCACACCAAATGCCTTCTTTAAACGCGCCCATACAAAAACCACAAAACAAGCCCACTTCATCGC
AACAATCTTCTCAAAACTTCTCTTACTCAGAGTCCAAACTAGGCTCTAAAAACCCTAAAAACAGCCTTTTACAGCCTTTA
GCCACTCCTAGTAAAATAAGCTCCACTAATGAAGTTAAAACGCCAACAAACGACACTAAACCCCCTTTAAAGCATTCTTC
AGAAGATCAAGAAAACAATCTCTTTGTAACGCCACCCACTGAAAAAACGCTCCCTAATAACACTCCTAACGCTAATATTA
ATGAACACAATGAAAGCAATGAAAATAGGGATAGTGTGGAAAAACAAGCGATTAGAGATCCTAATGTTAAAGAATTTGCG
TGCGGGAAGTGGGTCTATGATGATGAAAATTTACAAGCCTATCGCCCAAGCATTTTAAAACGCGTTGATGAAGACAAACA
GACTGCGACAGACATTACCCCTTGCGACTACAGCAACGCTGAAAATAAAAGCGGTAAAATCACTACCCCCTATACTAAAA
TCTCTGTTCATAAAACAGAGCCTTTAGAAGAGCCACAAACTTTTGAAGCTAAAAACAATTTTACCATCCTCCAAGCTAGA
AGCTCTACAGAAAAATGTAAAAGGGCCAGAGCGCGAAAAGACGGCACGACCAGGCAATGCTATCTCATAGAAGAGCCTTT
AAAACAAGCGTGGGAGAGCGAGTATCAAATCACCACGCAATTAGTGAAAGCTGTATATGAGCGCCCCAAACAAGACGATC
AAACAGAGCCGACTTTCTATGAAACCAACGAATTGGCTTATTCTTCCACACGAAAGAGTGAAGTTAAGCAAAATGAATTG
AATTTGAATGATAAGTTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAATCAAAGAAAGCAGTGA
ATACAAAGAATGGGTTAAAAACCATGTGCGCTTTAAAGAAGGGGTGTGCATGGTTTTAGAAATAGAAGAGCAACCACGAG
CCAAAAGCACGCCTTTGAGCATTGAAAACTCTCGCGTTGTTTGTGTCAAAAAAGGGAATTATTTATTCAACGAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

92.484

100

0.925

Multiple sequence alignment