Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   SD207_RS03135 Genome accession   NZ_CP138324
Coordinates   645516..645878 (+) Length   120 a.a.
NCBI ID   WP_000101096.1    Uniprot ID   A0ABN3ANQ3
Organism   Acinetobacter baumannii strain JBAB     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 640516..650878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD207_RS03120 (SD207_03120) - 643011..644129 (-) 1119 WP_001260821.1 efflux RND transporter periplasmic adaptor subunit -
  SD207_RS03125 (SD207_03125) - 644189..644827 (-) 639 WP_002046755.1 hypothetical protein -
  SD207_RS03130 (SD207_03130) pilG 645109..645492 (+) 384 WP_002046721.1 twitching motility response regulator PilG Regulator
  SD207_RS03135 (SD207_03135) pilH 645516..645878 (+) 363 WP_000101096.1 PleD family two-component system response regulator Machinery gene
  SD207_RS03140 (SD207_03140) - 645939..646475 (+) 537 WP_000729762.1 chemotaxis protein CheW -
  SD207_RS03145 (SD207_03145) - 646522..648600 (+) 2079 WP_002046750.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13479.47 Da        Isoelectric Point: 4.9102

>NTDB_id=824598 SD207_RS03135 WP_000101096.1 645516..645878(+) (pilH) [Acinetobacter baumannii strain JBAB]
MARILIVDDSPTETFRFKEILTKHGYDVLEASNGADGVTLAKAEQPDLVLMDVVMPGVNGFQATRQITRDEDTKHIPVVI
VSTKDQATDRVWGKRQGAIDYLIKPIEEKQLIDVIKQFLN

Nucleotide


Download         Length: 363 bp        

>NTDB_id=824598 SD207_RS03135 WP_000101096.1 645516..645878(+) (pilH) [Acinetobacter baumannii strain JBAB]
ATGGCACGTATTCTCATTGTTGATGACTCACCAACAGAAACTTTTCGTTTTAAAGAAATCCTAACTAAGCATGGCTATGA
CGTACTTGAAGCATCTAACGGTGCAGATGGTGTGACTTTGGCAAAAGCTGAGCAGCCTGACTTGGTATTAATGGATGTGG
TCATGCCAGGTGTAAATGGTTTCCAGGCAACGCGCCAGATTACCCGTGATGAAGACACGAAGCATATTCCAGTGGTGATT
GTGAGTACTAAGGATCAGGCAACTGACCGAGTATGGGGTAAACGTCAAGGCGCAATCGATTACTTAATCAAGCCAATCGA
AGAAAAGCAATTAATTGATGTAATTAAACAATTTCTAAATTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

39.496

99.167

0.392