Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   SD207_RS02995 Genome accession   NZ_CP138324
Coordinates   616290..616805 (-) Length   171 a.a.
NCBI ID   WP_000477156.1    Uniprot ID   A0ABX6CJ21
Organism   Acinetobacter baumannii strain JBAB     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 611290..621805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD207_RS02970 (SD207_02970) - 611836..613479 (+) 1644 WP_000281766.1 nitrite/sulfite reductase -
  SD207_RS02975 (SD207_02975) - 613472..613957 (+) 486 WP_000935253.1 DUF934 domain-containing protein -
  SD207_RS02980 (SD207_02980) - 614040..614393 (+) 354 WP_000457783.1 multidrug efflux SMR transporter -
  SD207_RS02985 (SD207_02985) - 614436..614879 (-) 444 WP_001176580.1 VOC family protein -
  SD207_RS02990 (SD207_02990) - 615006..616181 (-) 1176 WP_000129968.1 thiolase family protein -
  SD207_RS02995 (SD207_02995) fimT 616290..616805 (-) 516 WP_000477156.1 GspH/FimT family pseudopilin Machinery gene
  SD207_RS03000 (SD207_03000) omp38 617187..618257 (+) 1071 WP_002046685.1 outer membrane protein Omp38 -
  SD207_RS03005 (SD207_03005) - 618382..618540 (-) 159 WP_000692859.1 hypothetical protein -
  SD207_RS03010 (SD207_03010) - 618544..619749 (-) 1206 WP_002046707.1 RtcB family protein -
  SD207_RS03015 (SD207_03015) - 620026..621486 (-) 1461 WP_000004971.1 amino acid permease -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19594.80 Da        Isoelectric Point: 8.8196

>NTDB_id=824596 SD207_RS02995 WP_000477156.1 616290..616805(-) (fimT) [Acinetobacter baumannii strain JBAB]
MFKSPGFTTVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC

Nucleotide


Download         Length: 516 bp        

>NTDB_id=824596 SD207_RS02995 WP_000477156.1 616290..616805(-) (fimT) [Acinetobacter baumannii strain JBAB]
ATGTTTAAATCTCCTGGTTTTACTACAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTACTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAGCATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAT
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAGCTTAAAAATTGTTAG

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(50-149)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Acinetobacter baylyi ADP1

43.976

97.076

0.427