Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   M2Y48_RS03900 Genome accession   NZ_AP023344
Coordinates   813849..814133 (+) Length   94 a.a.
NCBI ID   WP_000736106.1    Uniprot ID   T0F3N0
Organism   Helicobacter pylori strain JSHR3     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 808849..819133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2Y48_RS03870 (JSHR3_07930) - 808878..809780 (-) 903 WP_248420189.1 S-adenosyl-l-methionine hydroxide adenosyltransferase family protein -
  M2Y48_RS03875 (JSHR3_07940) - 810026..810370 (-) 345 WP_096468245.1 hypothetical protein -
  M2Y48_RS03880 (JSHR3_07950) rsmH 810390..811316 (-) 927 WP_212893429.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  M2Y48_RS03885 (JSHR3_07960) hopE 811495..812316 (-) 822 WP_248420190.1 outer membrane protein -
  M2Y48_RS03890 (JSHR3_07970) - 812481..813269 (+) 789 WP_001140593.1 hypothetical protein -
  M2Y48_RS03895 (JSHR3_07980) - 813373..813852 (+) 480 WP_172417642.1 hypothetical protein -
  M2Y48_RS03900 (JSHR3_07990) comB2 813849..814133 (+) 285 WP_000736106.1 TrbC/VirB2 family protein Machinery gene
  M2Y48_RS03905 (JSHR3_08000) comB3 814144..814407 (+) 264 WP_096468242.1 competence protein ComB Machinery gene
  M2Y48_RS03910 (JSHR3_08010) - 814418..814654 (+) 237 WP_001186276.1 hypothetical protein -
  M2Y48_RS03915 - 814654..817240 (+) 2587 Protein_777 VirB4 family type IV secretion/conjugal transfer ATPase -
  M2Y48_RS03920 - 817237..817371 (+) 135 WP_033582542.1 hypothetical protein -
  M2Y48_RS03925 (JSHR3_08050) - 817364..818470 (+) 1107 WP_108303929.1 VirB8/TrbF family protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10752.11 Da        Isoelectric Point: 11.1589

>NTDB_id=82454 M2Y48_RS03900 WP_000736106.1 813849..814133(+) (comB2) [Helicobacter pylori strain JSHR3]
MKKLRHFRKLIAFLGFSPLLLQADMTTFFNSIEQQLTSPTAKGILMVIFLGLAIFIWKNLDRWKEILMTVLAIAIGAAIF
FKAPALANWFMSIF

Nucleotide


Download         Length: 285 bp        

>NTDB_id=82454 M2Y48_RS03900 WP_000736106.1 813849..814133(+) (comB2) [Helicobacter pylori strain JSHR3]
ATGAAAAAATTAAGGCATTTTAGAAAGCTCATCGCCTTTTTAGGTTTTTCACCACTTTTACTACAAGCGGATATGACTAC
CTTTTTTAATAGTATTGAACAACAACTCACTAGTCCCACCGCTAAGGGTATTTTGATGGTCATTTTTTTAGGGCTTGCTA
TTTTTATATGGAAAAATTTAGACAGATGGAAAGAAATCTTAATGACAGTCCTTGCTATTGCCATAGGCGCTGCAATCTTT
TTTAAAGCCCCAGCCTTAGCTAATTGGTTTATGAGTATTTTTTAA

Domains

Predicted by InterProScan.

TrbC/VIRB2 pilin (TrbC)

(4-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

57.778

95.745

0.553

Multiple sequence alignment